miRNA display CGI


Results 41 - 60 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26997 5' -58.6 NC_005809.1 + 18468 0.67 0.41354
Target:  5'- gGCGCCGGcGGCgucGGCCGauUCGUCcaCCg -3'
miRNA:   3'- -CGCGGCU-CCGacuCCGGU--AGUAGc-GG- -5'
26997 5' -58.6 NC_005809.1 + 20263 0.72 0.191149
Target:  5'- -gGCUGuuGCUGcuguuGGCCGUCGUUGCCc -3'
miRNA:   3'- cgCGGCucCGACu----CCGGUAGUAGCGG- -5'
26997 5' -58.6 NC_005809.1 + 40542 0.66 0.48172
Target:  5'- uCGCCGAGGC---GGCCggUAU-GCCg -3'
miRNA:   3'- cGCGGCUCCGacuCCGGuaGUAgCGG- -5'
26997 5' -58.6 NC_005809.1 + 29090 0.66 0.48172
Target:  5'- gGCGCCGAGGUc-AGGCCcgugCGggacUUGCUg -3'
miRNA:   3'- -CGCGGCUCCGacUCCGGua--GU----AGCGG- -5'
26997 5' -58.6 NC_005809.1 + 13904 0.66 0.48172
Target:  5'- gGCGUCGGGGUUGuuccaguucaGGGCgAU-GUCGCg -3'
miRNA:   3'- -CGCGGCUCCGAC----------UCCGgUAgUAGCGg -5'
26997 5' -58.6 NC_005809.1 + 15468 0.68 0.377346
Target:  5'- -gGCCGAaGCUGccGuCCAguugCAUCGCCa -3'
miRNA:   3'- cgCGGCUcCGACucC-GGUa---GUAGCGG- -5'
26997 5' -58.6 NC_005809.1 + 32469 0.68 0.377346
Target:  5'- cUGCCGAGGUgGGGGCgGcCGaugCGCCc -3'
miRNA:   3'- cGCGGCUCCGaCUCCGgUaGUa--GCGG- -5'
26997 5' -58.6 NC_005809.1 + 13023 0.67 0.386193
Target:  5'- aGCGCaGuGGC-GAcGGCCucGUCAUCGCg -3'
miRNA:   3'- -CGCGgCuCCGaCU-CCGG--UAGUAGCGg -5'
26997 5' -58.6 NC_005809.1 + 40815 0.67 0.386193
Target:  5'- cGCGCC-AGGCgcaGGccGGCCAUgAcCGCCc -3'
miRNA:   3'- -CGCGGcUCCGa--CU--CCGGUAgUaGCGG- -5'
26997 5' -58.6 NC_005809.1 + 18396 0.67 0.395176
Target:  5'- gGCGCCGGuGGC---GGCCA-CGUCGgCg -3'
miRNA:   3'- -CGCGGCU-CCGacuCCGGUaGUAGCgG- -5'
26997 5' -58.6 NC_005809.1 + 8639 0.67 0.41354
Target:  5'- gGUGgCGAGGUcgccGGCCuUCAUCGCg -3'
miRNA:   3'- -CGCgGCUCCGacu-CCGGuAGUAGCGg -5'
26997 5' -58.6 NC_005809.1 + 14860 0.68 0.351636
Target:  5'- aGCGCCGcacGCUGGGcGCCuuuaaGUUGCCc -3'
miRNA:   3'- -CGCGGCuc-CGACUC-CGGuag--UAGCGG- -5'
26997 5' -58.6 NC_005809.1 + 23948 0.69 0.304032
Target:  5'- gGCGCCGcccGGC-GAGGUCggCAuUUGCCg -3'
miRNA:   3'- -CGCGGCu--CCGaCUCCGGuaGU-AGCGG- -5'
26997 5' -58.6 NC_005809.1 + 23545 0.69 0.304032
Target:  5'- cGCgGUCGAuGGCcucGGCCGaCAUCGCCg -3'
miRNA:   3'- -CG-CGGCU-CCGacuCCGGUaGUAGCGG- -5'
26997 5' -58.6 NC_005809.1 + 10065 0.69 0.304032
Target:  5'- aGCGuCCGAGGCgucgucGGGGCgAgCcgUGCCa -3'
miRNA:   3'- -CGC-GGCUCCGa-----CUCCGgUaGuaGCGG- -5'
26997 5' -58.6 NC_005809.1 + 28724 0.68 0.377346
Target:  5'- gGCGCacgCGAGGaUGAGcGCCuuggCAUCGUCc -3'
miRNA:   3'- -CGCG---GCUCCgACUC-CGGua--GUAGCGG- -5'
26997 5' -58.6 NC_005809.1 + 4197 0.69 0.304032
Target:  5'- gGCGCCGAaaaguuggaaucGGCgcgcaccGuGCCAUCGUCGCa -3'
miRNA:   3'- -CGCGGCU------------CCGacu----C-CGGUAGUAGCGg -5'
26997 5' -58.6 NC_005809.1 + 31031 0.66 0.46166
Target:  5'- -gGCCGAGGCaaucgcgcGGGCCAaCGUgCGCg -3'
miRNA:   3'- cgCGGCUCCGac------UCCGGUaGUA-GCGg -5'
26997 5' -58.6 NC_005809.1 + 24695 0.66 0.46166
Target:  5'- aCGCCcAGGCUGu--CCAUCggUGCCa -3'
miRNA:   3'- cGCGGcUCCGACuccGGUAGuaGCGG- -5'
26997 5' -58.6 NC_005809.1 + 507 0.66 0.471636
Target:  5'- uGCGCCGcggcggcuugcAGGCgguucUGuucGGCCGUCAcCGCg -3'
miRNA:   3'- -CGCGGC-----------UCCG-----ACu--CCGGUAGUaGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.