miRNA display CGI


Results 61 - 80 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26997 5' -58.6 NC_005809.1 + 18268 0.68 0.335199
Target:  5'- uGCGCCGAGaacUUGccGGCCGUCAgcggGCCg -3'
miRNA:   3'- -CGCGGCUCc--GACu-CCGGUAGUag--CGG- -5'
26997 5' -58.6 NC_005809.1 + 14860 0.68 0.351636
Target:  5'- aGCGCCGcacGCUGGGcGCCuuuaaGUUGCCc -3'
miRNA:   3'- -CGCGGCuc-CGACUC-CGGuag--UAGCGG- -5'
26997 5' -58.6 NC_005809.1 + 37976 0.68 0.368637
Target:  5'- uCGCCGAGGCcGA-GCaguUCcUCGCCu -3'
miRNA:   3'- cGCGGCUCCGaCUcCGgu-AGuAGCGG- -5'
26997 5' -58.6 NC_005809.1 + 31031 0.66 0.46166
Target:  5'- -gGCCGAGGCaaucgcgcGGGCCAaCGUgCGCg -3'
miRNA:   3'- cgCGGCUCCGac------UCCGGUaGUA-GCGg -5'
26997 5' -58.6 NC_005809.1 + 6524 0.66 0.46166
Target:  5'- uUGgCGAGuuUuucGGGGUCGUCGUCGCCc -3'
miRNA:   3'- cGCgGCUCcgA---CUCCGGUAGUAGCGG- -5'
26997 5' -58.6 NC_005809.1 + 6277 0.66 0.451796
Target:  5'- cGCGCUG-GGC--AGGCCGaacagGUCGCCc -3'
miRNA:   3'- -CGCGGCuCCGacUCCGGUag---UAGCGG- -5'
26997 5' -58.6 NC_005809.1 + 12687 0.66 0.442049
Target:  5'- cGUGUCGAGGCccgccuUGAuagccuGGCUGUUcaaGUCGCCc -3'
miRNA:   3'- -CGCGGCUCCG------ACU------CCGGUAG---UAGCGG- -5'
26997 5' -58.6 NC_005809.1 + 1992 0.66 0.442049
Target:  5'- cUGCCGuGGCugaucuUGAGGCCcaggCGcUCGCUg -3'
miRNA:   3'- cGCGGCuCCG------ACUCCGGua--GU-AGCGG- -5'
26997 5' -58.6 NC_005809.1 + 27965 0.66 0.442049
Target:  5'- gGCGagcaCGuccucgguGGGCUG-GGCCAUCAggcuguaGCCg -3'
miRNA:   3'- -CGCg---GC--------UCCGACuCCGGUAGUag-----CGG- -5'
26997 5' -58.6 NC_005809.1 + 16274 0.67 0.432422
Target:  5'- cGCGCgCGgccacccggaAGGCUacccGGUCGUCGUCGCg -3'
miRNA:   3'- -CGCG-GC----------UCCGAcu--CCGGUAGUAGCGg -5'
26997 5' -58.6 NC_005809.1 + 32370 0.67 0.422918
Target:  5'- cCGCCGAGGCcccGGCCGcccagCAggaaGCCa -3'
miRNA:   3'- cGCGGCUCCGacuCCGGUa----GUag--CGG- -5'
26997 5' -58.6 NC_005809.1 + 35145 0.67 0.41354
Target:  5'- -aGCCGAacuGCUGGccGGCCAUCcggUGCCc -3'
miRNA:   3'- cgCGGCUc--CGACU--CCGGUAGua-GCGG- -5'
26997 5' -58.6 NC_005809.1 + 8639 0.67 0.41354
Target:  5'- gGUGgCGAGGUcgccGGCCuUCAUCGCg -3'
miRNA:   3'- -CGCgGCUCCGacu-CCGGuAGUAGCGg -5'
26997 5' -58.6 NC_005809.1 + 18396 0.67 0.395176
Target:  5'- gGCGCCGGuGGC---GGCCA-CGUCGgCg -3'
miRNA:   3'- -CGCGGCU-CCGacuCCGGUaGUAGCgG- -5'
26997 5' -58.6 NC_005809.1 + 40815 0.67 0.386193
Target:  5'- cGCGCC-AGGCgcaGGccGGCCAUgAcCGCCc -3'
miRNA:   3'- -CGCGGcUCCGa--CU--CCGGUAgUaGCGG- -5'
26997 5' -58.6 NC_005809.1 + 13023 0.67 0.386193
Target:  5'- aGCGCaGuGGC-GAcGGCCucGUCAUCGCg -3'
miRNA:   3'- -CGCGgCuCCGaCU-CCGG--UAGUAGCGg -5'
26997 5' -58.6 NC_005809.1 + 35785 0.68 0.377346
Target:  5'- uGCGCaagucaaGGcGCUGAaccaGGCCAUCgagcagGUCGCCa -3'
miRNA:   3'- -CGCGg------CUcCGACU----CCGGUAG------UAGCGG- -5'
26997 5' -58.6 NC_005809.1 + 32469 0.68 0.377346
Target:  5'- cUGCCGAGGUgGGGGCgGcCGaugCGCCc -3'
miRNA:   3'- cGCGGCUCCGaCUCCGgUaGUa--GCGG- -5'
26997 5' -58.6 NC_005809.1 + 28724 0.68 0.377346
Target:  5'- gGCGCacgCGAGGaUGAGcGCCuuggCAUCGUCc -3'
miRNA:   3'- -CGCG---GCUCCgACUC-CGGua--GUAGCGG- -5'
26997 5' -58.6 NC_005809.1 + 15468 0.68 0.377346
Target:  5'- -gGCCGAaGCUGccGuCCAguugCAUCGCCa -3'
miRNA:   3'- cgCGGCUcCGACucC-GGUa---GUAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.