Results 21 - 40 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26997 | 5' | -58.6 | NC_005809.1 | + | 32137 | 0.67 | 0.436258 |
Target: 5'- gGCGCCauugccaagcuguugGAaaugaaaaguGGC-GAGGCCAUCGgcgCGCUg -3' miRNA: 3'- -CGCGG---------------CU----------CCGaCUCCGGUAGUa--GCGG- -5' |
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26997 | 5' | -58.6 | NC_005809.1 | + | 4823 | 0.67 | 0.432422 |
Target: 5'- -gGUCGGGGCcGGcGCCGUCGUCGa- -3' miRNA: 3'- cgCGGCUCCGaCUcCGGUAGUAGCgg -5' |
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26997 | 5' | -58.6 | NC_005809.1 | + | 16274 | 0.67 | 0.432422 |
Target: 5'- cGCGCgCGgccacccggaAGGCUacccGGUCGUCGUCGCg -3' miRNA: 3'- -CGCG-GC----------UCCGAcu--CCGGUAGUAGCGg -5' |
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26997 | 5' | -58.6 | NC_005809.1 | + | 24196 | 0.67 | 0.432422 |
Target: 5'- gGCGCCaucGGCa-AGGCCAaCcUCGCCg -3' miRNA: 3'- -CGCGGcu-CCGacUCCGGUaGuAGCGG- -5' |
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26997 | 5' | -58.6 | NC_005809.1 | + | 32370 | 0.67 | 0.422918 |
Target: 5'- cCGCCGAGGCcccGGCCGcccagCAggaaGCCa -3' miRNA: 3'- cGCGGCUCCGacuCCGGUa----GUag--CGG- -5' |
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26997 | 5' | -58.6 | NC_005809.1 | + | 8639 | 0.67 | 0.41354 |
Target: 5'- gGUGgCGAGGUcgccGGCCuUCAUCGCg -3' miRNA: 3'- -CGCgGCUCCGacu-CCGGuAGUAGCGg -5' |
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26997 | 5' | -58.6 | NC_005809.1 | + | 18468 | 0.67 | 0.41354 |
Target: 5'- gGCGCCGGcGGCgucGGCCGauUCGUCcaCCg -3' miRNA: 3'- -CGCGGCU-CCGacuCCGGU--AGUAGc-GG- -5' |
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26997 | 5' | -58.6 | NC_005809.1 | + | 2444 | 0.67 | 0.41354 |
Target: 5'- gGCGCCGAaaCUGcGGCCcaggCGcUCGCCu -3' miRNA: 3'- -CGCGGCUccGACuCCGGua--GU-AGCGG- -5' |
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26997 | 5' | -58.6 | NC_005809.1 | + | 15134 | 0.67 | 0.41354 |
Target: 5'- aGCGCCaGGGcCUGcGGCCGccgggcgCGgugCGCCa -3' miRNA: 3'- -CGCGGcUCC-GACuCCGGUa------GUa--GCGG- -5' |
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26997 | 5' | -58.6 | NC_005809.1 | + | 35145 | 0.67 | 0.41354 |
Target: 5'- -aGCCGAacuGCUGGccGGCCAUCcggUGCCc -3' miRNA: 3'- cgCGGCUc--CGACU--CCGGUAGua-GCGG- -5' |
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26997 | 5' | -58.6 | NC_005809.1 | + | 18396 | 0.67 | 0.395176 |
Target: 5'- gGCGCCGGuGGC---GGCCA-CGUCGgCg -3' miRNA: 3'- -CGCGGCU-CCGacuCCGGUaGUAGCgG- -5' |
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26997 | 5' | -58.6 | NC_005809.1 | + | 42357 | 0.67 | 0.395176 |
Target: 5'- aUGCCGAGGUgc--GCCAgu-UCGCCg -3' miRNA: 3'- cGCGGCUCCGacucCGGUaguAGCGG- -5' |
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26997 | 5' | -58.6 | NC_005809.1 | + | 40815 | 0.67 | 0.386193 |
Target: 5'- cGCGCC-AGGCgcaGGccGGCCAUgAcCGCCc -3' miRNA: 3'- -CGCGGcUCCGa--CU--CCGGUAgUaGCGG- -5' |
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26997 | 5' | -58.6 | NC_005809.1 | + | 13023 | 0.67 | 0.386193 |
Target: 5'- aGCGCaGuGGC-GAcGGCCucGUCAUCGCg -3' miRNA: 3'- -CGCGgCuCCGaCU-CCGG--UAGUAGCGg -5' |
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26997 | 5' | -58.6 | NC_005809.1 | + | 35785 | 0.68 | 0.377346 |
Target: 5'- uGCGCaagucaaGGcGCUGAaccaGGCCAUCgagcagGUCGCCa -3' miRNA: 3'- -CGCGg------CUcCGACU----CCGGUAG------UAGCGG- -5' |
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26997 | 5' | -58.6 | NC_005809.1 | + | 32469 | 0.68 | 0.377346 |
Target: 5'- cUGCCGAGGUgGGGGCgGcCGaugCGCCc -3' miRNA: 3'- cGCGGCUCCGaCUCCGgUaGUa--GCGG- -5' |
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26997 | 5' | -58.6 | NC_005809.1 | + | 28724 | 0.68 | 0.377346 |
Target: 5'- gGCGCacgCGAGGaUGAGcGCCuuggCAUCGUCc -3' miRNA: 3'- -CGCG---GCUCCgACUC-CGGua--GUAGCGG- -5' |
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26997 | 5' | -58.6 | NC_005809.1 | + | 15468 | 0.68 | 0.377346 |
Target: 5'- -gGCCGAaGCUGccGuCCAguugCAUCGCCa -3' miRNA: 3'- cgCGGCUcCGACucC-GGUa---GUAGCGG- -5' |
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26997 | 5' | -58.6 | NC_005809.1 | + | 18424 | 0.68 | 0.377346 |
Target: 5'- cCGUCGAGGCgcuGGGCCAggcgCGCa -3' miRNA: 3'- cGCGGCUCCGac-UCCGGUaguaGCGg -5' |
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26997 | 5' | -58.6 | NC_005809.1 | + | 37976 | 0.68 | 0.368637 |
Target: 5'- uCGCCGAGGCcGA-GCaguUCcUCGCCu -3' miRNA: 3'- cGCGGCUCCGaCUcCGgu-AGuAGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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