Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26998 | 3' | -55.1 | NC_005809.1 | + | 42147 | 1.08 | 0.000951 |
Target: 5'- gCACUAAGACCAACGUGGCCCGCGACGu -3' miRNA: 3'- -GUGAUUCUGGUUGCACCGGGCGCUGC- -5' |
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26998 | 3' | -55.1 | NC_005809.1 | + | 33725 | 0.8 | 0.100005 |
Target: 5'- gACcGAGGCCAACGcgcUGGCCCGCGuuGCGg -3' miRNA: 3'- gUGaUUCUGGUUGC---ACCGGGCGC--UGC- -5' |
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26998 | 3' | -55.1 | NC_005809.1 | + | 17893 | 0.79 | 0.109005 |
Target: 5'- aGCcuGGGCgugGACGUGGCCCGCGGCGg -3' miRNA: 3'- gUGauUCUGg--UUGCACCGGGCGCUGC- -5' |
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26998 | 3' | -55.1 | NC_005809.1 | + | 13997 | 0.79 | 0.12219 |
Target: 5'- aCGCUGccgguGGCCGACGUGcGCgCCGCGAUGg -3' miRNA: 3'- -GUGAUu----CUGGUUGCAC-CG-GGCGCUGC- -5' |
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26998 | 3' | -55.1 | NC_005809.1 | + | 38039 | 0.74 | 0.236721 |
Target: 5'- aGCccAAGACCuuCGUGGUCUGCGAUGc -3' miRNA: 3'- gUGa-UUCUGGuuGCACCGGGCGCUGC- -5' |
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26998 | 3' | -55.1 | NC_005809.1 | + | 32595 | 0.74 | 0.236721 |
Target: 5'- aCGCUGuGACCAAgcUGGCCCGCGuCa -3' miRNA: 3'- -GUGAUuCUGGUUgcACCGGGCGCuGc -5' |
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26998 | 3' | -55.1 | NC_005809.1 | + | 35319 | 0.72 | 0.306491 |
Target: 5'- gCAC-AAGGCCGGCGacaucGGCCCGCGcCa -3' miRNA: 3'- -GUGaUUCUGGUUGCa----CCGGGCGCuGc -5' |
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26998 | 3' | -55.1 | NC_005809.1 | + | 15121 | 0.72 | 0.330285 |
Target: 5'- gCGCUGGcauACCAGCGccagGGCCUGCGGCc -3' miRNA: 3'- -GUGAUUc--UGGUUGCa---CCGGGCGCUGc -5' |
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26998 | 3' | -55.1 | NC_005809.1 | + | 4616 | 0.7 | 0.428743 |
Target: 5'- aGCc-AGGCCAAUGuUGGCCCGCG-Cu -3' miRNA: 3'- gUGauUCUGGUUGC-ACCGGGCGCuGc -5' |
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26998 | 3' | -55.1 | NC_005809.1 | + | 23878 | 0.69 | 0.458454 |
Target: 5'- gCGCUGcuGCUGACcgaGGCCCGCGugGu -3' miRNA: 3'- -GUGAUucUGGUUGca-CCGGGCGCugC- -5' |
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26998 | 3' | -55.1 | NC_005809.1 | + | 12425 | 0.69 | 0.489228 |
Target: 5'- cCGCUGAuGuCCGACGcggugcaGGCCgGCGGCGu -3' miRNA: 3'- -GUGAUU-CuGGUUGCa------CCGGgCGCUGC- -5' |
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26998 | 3' | -55.1 | NC_005809.1 | + | 18854 | 0.68 | 0.520934 |
Target: 5'- cCACcGAGGC--AC-UGGCCCGCGACc -3' miRNA: 3'- -GUGaUUCUGguUGcACCGGGCGCUGc -5' |
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26998 | 3' | -55.1 | NC_005809.1 | + | 7377 | 0.68 | 0.531683 |
Target: 5'- -----cGuCCAGCGgcgGGCaCCGCGGCGa -3' miRNA: 3'- gugauuCuGGUUGCa--CCG-GGCGCUGC- -5' |
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26998 | 3' | -55.1 | NC_005809.1 | + | 12602 | 0.68 | 0.531683 |
Target: 5'- gGCUGcauccAGGCCGuCGU-GCgCCGCGACGa -3' miRNA: 3'- gUGAU-----UCUGGUuGCAcCG-GGCGCUGC- -5' |
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26998 | 3' | -55.1 | NC_005809.1 | + | 1707 | 0.68 | 0.564375 |
Target: 5'- uCGCcguGGGCCGGCGU-GCCgGCGAgGg -3' miRNA: 3'- -GUGau-UCUGGUUGCAcCGGgCGCUgC- -5' |
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26998 | 3' | -55.1 | NC_005809.1 | + | 6617 | 0.67 | 0.575396 |
Target: 5'- -----uGACCAGCG-GGCgCGUGGCGc -3' miRNA: 3'- gugauuCUGGUUGCaCCGgGCGCUGC- -5' |
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26998 | 3' | -55.1 | NC_005809.1 | + | 40416 | 0.67 | 0.575396 |
Target: 5'- aACUGuucGCCAACGUGuaCgGCGGCGc -3' miRNA: 3'- gUGAUuc-UGGUUGCACcgGgCGCUGC- -5' |
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26998 | 3' | -55.1 | NC_005809.1 | + | 8975 | 0.67 | 0.575396 |
Target: 5'- ------uGCCAGCGUGGCcgugCCGCGAUa -3' miRNA: 3'- gugauucUGGUUGCACCG----GGCGCUGc -5' |
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26998 | 3' | -55.1 | NC_005809.1 | + | 31904 | 0.67 | 0.586464 |
Target: 5'- cCAUcGAGGCCGA-GU-GCCUGCGGCGu -3' miRNA: 3'- -GUGaUUCUGGUUgCAcCGGGCGCUGC- -5' |
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26998 | 3' | -55.1 | NC_005809.1 | + | 37692 | 0.67 | 0.586464 |
Target: 5'- ---aAGGACgCAugauuGCGUGGCUCGcCGGCGa -3' miRNA: 3'- gugaUUCUG-GU-----UGCACCGGGC-GCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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