Results 61 - 64 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26998 | 5' | -59.5 | NC_005809.1 | + | 27825 | 0.66 | 0.434842 |
Target: 5'- -gCGCGCGCUgcccgcgguggcgccGGCCGCGCcgcugcUCAAgaaCGu -3' miRNA: 3'- caGCGCGCGA---------------CCGGCGCG------AGUUa--GCc -5' |
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26998 | 5' | -59.5 | NC_005809.1 | + | 29129 | 0.66 | 0.440582 |
Target: 5'- -aCGCGCGCgaGGCCGCauucCUCugccAUCGc -3' miRNA: 3'- caGCGCGCGa-CCGGCGc---GAGu---UAGCc -5' |
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26998 | 5' | -59.5 | NC_005809.1 | + | 2587 | 0.66 | 0.440582 |
Target: 5'- -gCGCGCGCUuGCCGCccuGUUgCAAcCGGa -3' miRNA: 3'- caGCGCGCGAcCGGCG---CGA-GUUaGCC- -5' |
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26998 | 5' | -59.5 | NC_005809.1 | + | 4397 | 0.66 | 0.440582 |
Target: 5'- cGUCGCGC-CgGGCCuugaGCGUgcggCAGUCGu -3' miRNA: 3'- -CAGCGCGcGaCCGG----CGCGa---GUUAGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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