Results 61 - 64 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26998 | 5' | -59.5 | NC_005809.1 | + | 39841 | 0.75 | 0.108039 |
Target: 5'- --aGCaGCGCcgGGCCGCGCUCAAgcgucCGGc -3' miRNA: 3'- cagCG-CGCGa-CCGGCGCGAGUUa----GCC- -5' |
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26998 | 5' | -59.5 | NC_005809.1 | + | 41193 | 0.66 | 0.412323 |
Target: 5'- cGUUGUGCGCgUGGCCGCGgCgcccuauGUCa- -3' miRNA: 3'- -CAGCGCGCG-ACCGGCGC-Gagu----UAGcc -5' |
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26998 | 5' | -59.5 | NC_005809.1 | + | 42124 | 0.66 | 0.421619 |
Target: 5'- -cCGCaaGCUGGCCGCGCagCAGc--- -3' miRNA: 3'- caGCGcgCGACCGGCGCGa-GUUagcc -5' |
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26998 | 5' | -59.5 | NC_005809.1 | + | 42185 | 1.09 | 0.000292 |
Target: 5'- aGUCGCGCGCUGGCCGCGCUCAAUCGGc -3' miRNA: 3'- -CAGCGCGCGACCGGCGCGAGUUAGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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