Results 61 - 64 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26998 | 5' | -59.5 | NC_005809.1 | + | 1880 | 0.66 | 0.412323 |
Target: 5'- cGUgGCcgGCGCUGGCCGgGUgggCGAacagcagCGGg -3' miRNA: 3'- -CAgCG--CGCGACCGGCgCGa--GUUa------GCC- -5' |
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26998 | 5' | -59.5 | NC_005809.1 | + | 1670 | 0.67 | 0.385212 |
Target: 5'- uUUGCGCGUgaugcuGCCGCGCaggUAGUCGa -3' miRNA: 3'- cAGCGCGCGac----CGGCGCGa--GUUAGCc -5' |
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26998 | 5' | -59.5 | NC_005809.1 | + | 1081 | 0.69 | 0.268224 |
Target: 5'- -aCGCGCGCgguagauugccuUGGCCGUG-UCGcgCGGc -3' miRNA: 3'- caGCGCGCG------------ACCGGCGCgAGUuaGCC- -5' |
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26998 | 5' | -59.5 | NC_005809.1 | + | 995 | 0.66 | 0.43104 |
Target: 5'- cGUCGCcCGCUGcCCGCGC-CAcuggcCGGg -3' miRNA: 3'- -CAGCGcGCGACcGGCGCGaGUua---GCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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