miRNA display CGI


Results 41 - 60 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26998 5' -59.5 NC_005809.1 + 35479 0.66 0.403156
Target:  5'- aUCGUGCGCgUGGgCGCGC-CG--UGGg -3'
miRNA:   3'- cAGCGCGCG-ACCgGCGCGaGUuaGCC- -5'
26998 5' -59.5 NC_005809.1 + 1880 0.66 0.412323
Target:  5'- cGUgGCcgGCGCUGGCCGgGUgggCGAacagcagCGGg -3'
miRNA:   3'- -CAgCG--CGCGACCGGCgCGa--GUUa------GCC- -5'
26998 5' -59.5 NC_005809.1 + 9020 0.66 0.412323
Target:  5'- uUCGCcaGCGgUGGCCGUGCcgUAAUUGc -3'
miRNA:   3'- cAGCG--CGCgACCGGCGCGa-GUUAGCc -5'
26998 5' -59.5 NC_005809.1 + 9164 0.66 0.412323
Target:  5'- uUCGCcaGCGgUGGCCGUGCcgUAAUUGc -3'
miRNA:   3'- cAGCG--CGCgACCGGCGCGa-GUUAGCc -5'
26998 5' -59.5 NC_005809.1 + 9308 0.66 0.412323
Target:  5'- uUCGCcaGCGgUGGCCGUGCcgUAAUUGc -3'
miRNA:   3'- cAGCG--CGCgACCGGCGCGa-GUUAGCc -5'
26998 5' -59.5 NC_005809.1 + 8925 0.66 0.421619
Target:  5'- cUCGCcaGCGgUGGCCGUGCcgUAAUUGc -3'
miRNA:   3'- cAGCG--CGCgACCGGCGCGa-GUUAGCc -5'
26998 5' -59.5 NC_005809.1 + 34200 0.66 0.421619
Target:  5'- --aGCGCGa-GGCCGgGUUCGAgcCGGa -3'
miRNA:   3'- cagCGCGCgaCCGGCgCGAGUUa-GCC- -5'
26998 5' -59.5 NC_005809.1 + 42124 0.66 0.421619
Target:  5'- -cCGCaaGCUGGCCGCGCagCAGc--- -3'
miRNA:   3'- caGCGcgCGACCGGCGCGa-GUUagcc -5'
26998 5' -59.5 NC_005809.1 + 11951 0.66 0.421619
Target:  5'- uUCGCGCcgGCUGGUCGCaaGaaCAGUCGc -3'
miRNA:   3'- cAGCGCG--CGACCGGCG--CgaGUUAGCc -5'
26998 5' -59.5 NC_005809.1 + 9260 0.66 0.403156
Target:  5'- uUCGCcaGCGgUGGCCGUGCcgCGAUagccagCGGu -3'
miRNA:   3'- cAGCG--CGCgACCGGCGCGa-GUUA------GCC- -5'
26998 5' -59.5 NC_005809.1 + 9116 0.66 0.403156
Target:  5'- uUCGCcaGCGgUGGCCGUGCcgCGAUagccagCGGu -3'
miRNA:   3'- cAGCG--CGCgACCGGCGCGa-GUUA------GCC- -5'
26998 5' -59.5 NC_005809.1 + 13769 0.73 0.138578
Target:  5'- --gGCGCGCUGGCUGCuCaaGAUCGGc -3'
miRNA:   3'- cagCGCGCGACCGGCGcGagUUAGCC- -5'
26998 5' -59.5 NC_005809.1 + 7535 0.72 0.176855
Target:  5'- -cCGUGCGCUcGGCggCGUGCUCGAUCu- -3'
miRNA:   3'- caGCGCGCGA-CCG--GCGCGAGUUAGcc -5'
26998 5' -59.5 NC_005809.1 + 32791 0.72 0.181646
Target:  5'- -gUGCGCGacCUGGCCGCGUggaaCGAUCuGGa -3'
miRNA:   3'- caGCGCGC--GACCGGCGCGa---GUUAG-CC- -5'
26998 5' -59.5 NC_005809.1 + 20047 0.72 0.186552
Target:  5'- -gCGCGCGCU-GCgCGUGCUCGcugCGGg -3'
miRNA:   3'- caGCGCGCGAcCG-GCGCGAGUua-GCC- -5'
26998 5' -59.5 NC_005809.1 + 21404 0.7 0.235544
Target:  5'- -cCGCGCaGCaGGCCGCGCUguugaacCAGggcgCGGa -3'
miRNA:   3'- caGCGCG-CGaCCGGCGCGA-------GUUa---GCC- -5'
26998 5' -59.5 NC_005809.1 + 15118 0.69 0.275046
Target:  5'- --gGCGCGCUGGCauaccaGCGC-CAGggccugCGGc -3'
miRNA:   3'- cagCGCGCGACCGg-----CGCGaGUUa-----GCC- -5'
26998 5' -59.5 NC_005809.1 + 19735 0.69 0.289106
Target:  5'- -gCGCGCGCUgucggcugucGGCaGCGCggcgaAGUCGGg -3'
miRNA:   3'- caGCGCGCGA----------CCGgCGCGag---UUAGCC- -5'
26998 5' -59.5 NC_005809.1 + 18134 0.67 0.350118
Target:  5'- uGUCGC-CGa-GGCCGCGCgcggCAccgacaaAUCGGg -3'
miRNA:   3'- -CAGCGcGCgaCCGGCGCGa---GU-------UAGCC- -5'
26998 5' -59.5 NC_005809.1 + 11533 0.67 0.359307
Target:  5'- uUCGCGCacGUUGGcCCGCGCgauugccUCGGc -3'
miRNA:   3'- cAGCGCG--CGACC-GGCGCGaguu---AGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.