Results 61 - 64 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26998 | 5' | -59.5 | NC_005809.1 | + | 18134 | 0.67 | 0.350118 |
Target: 5'- uGUCGC-CGa-GGCCGCGCgcggCAccgacaaAUCGGg -3' miRNA: 3'- -CAGCGcGCgaCCGGCGCGa---GU-------UAGCC- -5' |
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26998 | 5' | -59.5 | NC_005809.1 | + | 11533 | 0.67 | 0.359307 |
Target: 5'- uUCGCGCacGUUGGcCCGCGCgauugccUCGGc -3' miRNA: 3'- cAGCGCG--CGACC-GGCGCGaguu---AGCC- -5' |
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26998 | 5' | -59.5 | NC_005809.1 | + | 9116 | 0.66 | 0.403156 |
Target: 5'- uUCGCcaGCGgUGGCCGUGCcgCGAUagccagCGGu -3' miRNA: 3'- cAGCG--CGCgACCGGCGCGa-GUUA------GCC- -5' |
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26998 | 5' | -59.5 | NC_005809.1 | + | 8225 | 0.74 | 0.127607 |
Target: 5'- uUCGUGCGC-GGCCGUGCcCucGUCGGc -3' miRNA: 3'- cAGCGCGCGaCCGGCGCGaGu-UAGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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