miRNA display CGI


Results 41 - 60 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26998 5' -59.5 NC_005809.1 + 29625 0.72 0.181646
Target:  5'- -cCGgGCGCuugUGGCCGgGCUUGAUgGGg -3'
miRNA:   3'- caGCgCGCG---ACCGGCgCGAGUUAgCC- -5'
26998 5' -59.5 NC_005809.1 + 33061 0.72 0.176855
Target:  5'- uGUCGUGCGCUucaucgGGUCGCGCagCGAcgCGGc -3'
miRNA:   3'- -CAGCGCGCGA------CCGGCGCGa-GUUa-GCC- -5'
26998 5' -59.5 NC_005809.1 + 11089 0.72 0.17591
Target:  5'- gGUCGCGCGCgagcaccuugucGGCUGCGgC-CAAUUGGu -3'
miRNA:   3'- -CAGCGCGCGa-----------CCGGCGC-GaGUUAGCC- -5'
26998 5' -59.5 NC_005809.1 + 27416 0.73 0.150409
Target:  5'- cGUCGCGCGcCUGGCgcacCGCGCcCGG-CGGc -3'
miRNA:   3'- -CAGCGCGC-GACCG----GCGCGaGUUaGCC- -5'
26998 5' -59.5 NC_005809.1 + 6638 0.74 0.124132
Target:  5'- uUCGCGCGCuUGGCCggaguguccGCGCUCA--UGGu -3'
miRNA:   3'- cAGCGCGCG-ACCGG---------CGCGAGUuaGCC- -5'
26998 5' -59.5 NC_005809.1 + 18563 0.74 0.120745
Target:  5'- cGUCG-GUGgaGGCCGCGCUCg--CGGu -3'
miRNA:   3'- -CAGCgCGCgaCCGGCGCGAGuuaGCC- -5'
26998 5' -59.5 NC_005809.1 + 7544 0.7 0.248577
Target:  5'- -cCGCaCGCUGGCuCGCGgccgggucguaCUUAAUCGGa -3'
miRNA:   3'- caGCGcGCGACCG-GCGC-----------GAGUUAGCC- -5'
26998 5' -59.5 NC_005809.1 + 1081 0.69 0.268224
Target:  5'- -aCGCGCGCgguagauugccuUGGCCGUG-UCGcgCGGc -3'
miRNA:   3'- caGCGCGCG------------ACCGGCGCgAGUuaGCC- -5'
26998 5' -59.5 NC_005809.1 + 21388 0.67 0.385212
Target:  5'- aUgGCGCGCUgGGCCuGCGCgagCA--UGGa -3'
miRNA:   3'- cAgCGCGCGA-CCGG-CGCGa--GUuaGCC- -5'
26998 5' -59.5 NC_005809.1 + 19887 0.67 0.385212
Target:  5'- cGUCGCGCGCcuucuUGGCCGUGg-CAa--GGu -3'
miRNA:   3'- -CAGCGCGCG-----ACCGGCGCgaGUuagCC- -5'
26998 5' -59.5 NC_005809.1 + 1670 0.67 0.385212
Target:  5'- uUUGCGCGUgaugcuGCCGCGCaggUAGUCGa -3'
miRNA:   3'- cAGCGCGCGac----CGGCGCGa--GUUAGCc -5'
26998 5' -59.5 NC_005809.1 + 10736 0.67 0.376441
Target:  5'- cGUCGCcuuGCuGCUcgccaaGGgCGCGCUCGAcuUCGGc -3'
miRNA:   3'- -CAGCG---CG-CGA------CCgGCGCGAGUU--AGCC- -5'
26998 5' -59.5 NC_005809.1 + 25794 0.68 0.342726
Target:  5'- -aUGCGCGC-GG-CGCGCUCGguAUCGu -3'
miRNA:   3'- caGCGCGCGaCCgGCGCGAGU--UAGCc -5'
26998 5' -59.5 NC_005809.1 + 29574 0.68 0.334644
Target:  5'- aUCGCGUcagGUcGGCCGCGCcCAGgcgcgCGGu -3'
miRNA:   3'- cAGCGCG---CGaCCGGCGCGaGUUa----GCC- -5'
26998 5' -59.5 NC_005809.1 + 25301 0.68 0.326703
Target:  5'- gGUCGUGCgGCcGGCCcugccaccgGCGCUCGucgcCGGg -3'
miRNA:   3'- -CAGCGCG-CGaCCGG---------CGCGAGUua--GCC- -5'
26998 5' -59.5 NC_005809.1 + 2245 0.68 0.324348
Target:  5'- --gGCGCG-UGGCCGCGCaaugaaucuucuugUCGAUCa- -3'
miRNA:   3'- cagCGCGCgACCGGCGCG--------------AGUUAGcc -5'
26998 5' -59.5 NC_005809.1 + 22057 0.68 0.303724
Target:  5'- cGUCGCGCuuGCUcgGGUCGCGgUCGGcgcgCGGc -3'
miRNA:   3'- -CAGCGCG--CGA--CCGGCGCgAGUUa---GCC- -5'
26998 5' -59.5 NC_005809.1 + 2546 0.69 0.296345
Target:  5'- uUCGCG-GUaggGGCCGCGCUCGuaauugcCGGc -3'
miRNA:   3'- cAGCGCgCGa--CCGGCGCGAGUua-----GCC- -5'
26998 5' -59.5 NC_005809.1 + 28282 0.69 0.291985
Target:  5'- -cCGCGCGCUGGgacacggcgcagaacUugaagaacucggCGCGCUCGgcGUCGGa -3'
miRNA:   3'- caGCGCGCGACC---------------G------------GCGCGAGU--UAGCC- -5'
26998 5' -59.5 NC_005809.1 + 16812 0.69 0.282007
Target:  5'- gGUCGCGCcCaGGCgGCGCaguUCAcgCGGc -3'
miRNA:   3'- -CAGCGCGcGaCCGgCGCG---AGUuaGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.