Results 21 - 40 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26998 | 5' | -59.5 | NC_005809.1 | + | 13582 | 0.67 | 0.394118 |
Target: 5'- -aCGCGCGCUcGCCauCGCUCAccUGGa -3' miRNA: 3'- caGCGCGCGAcCGGc-GCGAGUuaGCC- -5' |
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26998 | 5' | -59.5 | NC_005809.1 | + | 3875 | 0.67 | 0.394118 |
Target: 5'- cGUCGC-UGUaGGCCGCGCUgCcGUCGc -3' miRNA: 3'- -CAGCGcGCGaCCGGCGCGA-GuUAGCc -5' |
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26998 | 5' | -59.5 | NC_005809.1 | + | 20628 | 0.67 | 0.388759 |
Target: 5'- gGUCG-GUGUcGGCCuGCGCUCGuuccuguccccgaauAUCGGu -3' miRNA: 3'- -CAGCgCGCGaCCGG-CGCGAGU---------------UAGCC- -5' |
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26998 | 5' | -59.5 | NC_005809.1 | + | 19887 | 0.67 | 0.385212 |
Target: 5'- cGUCGCGCGCcuucuUGGCCGUGg-CAa--GGu -3' miRNA: 3'- -CAGCGCGCG-----ACCGGCGCgaGUuagCC- -5' |
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26998 | 5' | -59.5 | NC_005809.1 | + | 1670 | 0.67 | 0.385212 |
Target: 5'- uUUGCGCGUgaugcuGCCGCGCaggUAGUCGa -3' miRNA: 3'- cAGCGCGCGac----CGGCGCGa--GUUAGCc -5' |
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26998 | 5' | -59.5 | NC_005809.1 | + | 21388 | 0.67 | 0.385212 |
Target: 5'- aUgGCGCGCUgGGCCuGCGCgagCA--UGGa -3' miRNA: 3'- cAgCGCGCGA-CCGG-CGCGa--GUuaGCC- -5' |
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26998 | 5' | -59.5 | NC_005809.1 | + | 10736 | 0.67 | 0.376441 |
Target: 5'- cGUCGCcuuGCuGCUcgccaaGGgCGCGCUCGAcuUCGGc -3' miRNA: 3'- -CAGCG---CG-CGA------CCgGCGCGAGUU--AGCC- -5' |
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26998 | 5' | -59.5 | NC_005809.1 | + | 11533 | 0.67 | 0.359307 |
Target: 5'- uUCGCGCacGUUGGcCCGCGCgauugccUCGGc -3' miRNA: 3'- cAGCGCG--CGACC-GGCGCGaguu---AGCC- -5' |
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26998 | 5' | -59.5 | NC_005809.1 | + | 18134 | 0.67 | 0.350118 |
Target: 5'- uGUCGC-CGa-GGCCGCGCgcggCAccgacaaAUCGGg -3' miRNA: 3'- -CAGCGcGCgaCCGGCGCGa---GU-------UAGCC- -5' |
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26998 | 5' | -59.5 | NC_005809.1 | + | 25794 | 0.68 | 0.342726 |
Target: 5'- -aUGCGCGC-GG-CGCGCUCGguAUCGu -3' miRNA: 3'- caGCGCGCGaCCgGCGCGAGU--UAGCc -5' |
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26998 | 5' | -59.5 | NC_005809.1 | + | 29574 | 0.68 | 0.334644 |
Target: 5'- aUCGCGUcagGUcGGCCGCGCcCAGgcgcgCGGu -3' miRNA: 3'- cAGCGCG---CGaCCGGCGCGaGUUa----GCC- -5' |
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26998 | 5' | -59.5 | NC_005809.1 | + | 25301 | 0.68 | 0.326703 |
Target: 5'- gGUCGUGCgGCcGGCCcugccaccgGCGCUCGucgcCGGg -3' miRNA: 3'- -CAGCGCG-CGaCCGG---------CGCGAGUua--GCC- -5' |
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26998 | 5' | -59.5 | NC_005809.1 | + | 2245 | 0.68 | 0.324348 |
Target: 5'- --gGCGCG-UGGCCGCGCaaugaaucuucuugUCGAUCa- -3' miRNA: 3'- cagCGCGCgACCGGCGCG--------------AGUUAGcc -5' |
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26998 | 5' | -59.5 | NC_005809.1 | + | 22057 | 0.68 | 0.303724 |
Target: 5'- cGUCGCGCuuGCUcgGGUCGCGgUCGGcgcgCGGc -3' miRNA: 3'- -CAGCGCG--CGA--CCGGCGCgAGUUa---GCC- -5' |
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26998 | 5' | -59.5 | NC_005809.1 | + | 2546 | 0.69 | 0.296345 |
Target: 5'- uUCGCG-GUaggGGCCGCGCUCGuaauugcCGGc -3' miRNA: 3'- cAGCGCgCGa--CCGGCGCGAGUua-----GCC- -5' |
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26998 | 5' | -59.5 | NC_005809.1 | + | 28282 | 0.69 | 0.291985 |
Target: 5'- -cCGCGCGCUGGgacacggcgcagaacUugaagaacucggCGCGCUCGgcGUCGGa -3' miRNA: 3'- caGCGCGCGACC---------------G------------GCGCGAGU--UAGCC- -5' |
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26998 | 5' | -59.5 | NC_005809.1 | + | 19735 | 0.69 | 0.289106 |
Target: 5'- -gCGCGCGCUgucggcugucGGCaGCGCggcgaAGUCGGg -3' miRNA: 3'- caGCGCGCGA----------CCGgCGCGag---UUAGCC- -5' |
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26998 | 5' | -59.5 | NC_005809.1 | + | 16812 | 0.69 | 0.282007 |
Target: 5'- gGUCGCGCcCaGGCgGCGCaguUCAcgCGGc -3' miRNA: 3'- -CAGCGCGcGaCCGgCGCG---AGUuaGCC- -5' |
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26998 | 5' | -59.5 | NC_005809.1 | + | 15118 | 0.69 | 0.275046 |
Target: 5'- --gGCGCGCUGGCauaccaGCGC-CAGggccugCGGc -3' miRNA: 3'- cagCGCGCGACCGg-----CGCGaGUUa-----GCC- -5' |
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26998 | 5' | -59.5 | NC_005809.1 | + | 1081 | 0.69 | 0.268224 |
Target: 5'- -aCGCGCGCgguagauugccuUGGCCGUG-UCGcgCGGc -3' miRNA: 3'- caGCGCGCG------------ACCGGCGCgAGUuaGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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