Results 21 - 40 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26999 | 3' | -52.4 | NC_005809.1 | + | 8452 | 0.66 | 0.718471 |
Target: 5'- cGCGAUGU-CGGCGUcgaggugGCCUGCgauGCCGCa -3' miRNA: 3'- aUGUUGUAcGCCGUA-------UGGAUG---CGGUG- -5' |
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26999 | 3' | -52.4 | NC_005809.1 | + | 14357 | 0.66 | 0.717339 |
Target: 5'- cGCGugGUcgucggcGUGGCcgACCUggacaagGCGCCGCa -3' miRNA: 3'- aUGUugUA-------CGCCGuaUGGA-------UGCGGUG- -5' |
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26999 | 3' | -52.4 | NC_005809.1 | + | 14863 | 0.67 | 0.708247 |
Target: 5'- cAUGACcgGCGGCGaGCCgcUGCCGg -3' miRNA: 3'- aUGUUGuaCGCCGUaUGGauGCGGUg -5' |
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26999 | 3' | -52.4 | NC_005809.1 | + | 33785 | 0.67 | 0.708247 |
Target: 5'- -cCGGC--GCGGCcgACCcaucgUGCGCCGCg -3' miRNA: 3'- auGUUGuaCGCCGuaUGG-----AUGCGGUG- -5' |
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26999 | 3' | -52.4 | NC_005809.1 | + | 37112 | 0.67 | 0.704823 |
Target: 5'- aACGACc-GCGGCGUgauggucgauaccgACCUcgcccACGCCGCc -3' miRNA: 3'- aUGUUGuaCGCCGUA--------------UGGA-----UGCGGUG- -5' |
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26999 | 3' | -52.4 | NC_005809.1 | + | 10935 | 0.67 | 0.696807 |
Target: 5'- aGCGGCA--CGGUAUGCCUugaggcccUGCCACg -3' miRNA: 3'- aUGUUGUacGCCGUAUGGAu-------GCGGUG- -5' |
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26999 | 3' | -52.4 | NC_005809.1 | + | 37427 | 0.67 | 0.696807 |
Target: 5'- aGCAGCGa-CGGCc-GCCUGCGCgGCa -3' miRNA: 3'- aUGUUGUacGCCGuaUGGAUGCGgUG- -5' |
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26999 | 3' | -52.4 | NC_005809.1 | + | 18465 | 0.67 | 0.696807 |
Target: 5'- cGCGGCGccgGCGGCGUcgGCCgauuCGuCCACc -3' miRNA: 3'- aUGUUGUa--CGCCGUA--UGGau--GC-GGUG- -5' |
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26999 | 3' | -52.4 | NC_005809.1 | + | 12211 | 0.67 | 0.685297 |
Target: 5'- cUACAGCA-GCGGCGgguUCUcGCGCgACg -3' miRNA: 3'- -AUGUUGUaCGCCGUau-GGA-UGCGgUG- -5' |
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26999 | 3' | -52.4 | NC_005809.1 | + | 13998 | 0.67 | 0.67373 |
Target: 5'- cGCuGCcgGUGGCcgACgUgcGCGCCGCg -3' miRNA: 3'- aUGuUGuaCGCCGuaUGgA--UGCGGUG- -5' |
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26999 | 3' | -52.4 | NC_005809.1 | + | 21453 | 0.67 | 0.67373 |
Target: 5'- cUGCGGCGgggGCGGCAggauguugGCCU-CGaCCAUg -3' miRNA: 3'- -AUGUUGUa--CGCCGUa-------UGGAuGC-GGUG- -5' |
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26999 | 3' | -52.4 | NC_005809.1 | + | 41877 | 0.67 | 0.67373 |
Target: 5'- gGCggUAUcuuggGCGGCccgGCCgGCGCCGCc -3' miRNA: 3'- aUGuuGUA-----CGCCGua-UGGaUGCGGUG- -5' |
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26999 | 3' | -52.4 | NC_005809.1 | + | 21993 | 0.67 | 0.67373 |
Target: 5'- cGCAGCGUGCGGguU-UCgucgGCGCCu- -3' miRNA: 3'- aUGUUGUACGCCguAuGGa---UGCGGug -5' |
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26999 | 3' | -52.4 | NC_005809.1 | + | 34304 | 0.67 | 0.67373 |
Target: 5'- gAUAGCGUGCGuCAgaucgaacACCUGgGCCGCu -3' miRNA: 3'- aUGUUGUACGCcGUa-------UGGAUgCGGUG- -5' |
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26999 | 3' | -52.4 | NC_005809.1 | + | 36676 | 0.67 | 0.662119 |
Target: 5'- gGCGGCAcacucaccacGCuGGCG-ACCUAUGCCACu -3' miRNA: 3'- aUGUUGUa---------CG-CCGUaUGGAUGCGGUG- -5' |
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26999 | 3' | -52.4 | NC_005809.1 | + | 30082 | 0.67 | 0.662119 |
Target: 5'- -----uGUGCGGC--GCCcggGCGCCACg -3' miRNA: 3'- auguugUACGCCGuaUGGa--UGCGGUG- -5' |
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26999 | 3' | -52.4 | NC_005809.1 | + | 210 | 0.68 | 0.650476 |
Target: 5'- aGCAuCAUgGUGGCGUAggUAUGCCGCa -3' miRNA: 3'- aUGUuGUA-CGCCGUAUggAUGCGGUG- -5' |
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26999 | 3' | -52.4 | NC_005809.1 | + | 14494 | 0.68 | 0.638814 |
Target: 5'- aUACGACGccGCGGCc-ACCUGC-CCGCu -3' miRNA: 3'- -AUGUUGUa-CGCCGuaUGGAUGcGGUG- -5' |
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26999 | 3' | -52.4 | NC_005809.1 | + | 27724 | 0.68 | 0.638814 |
Target: 5'- -cCAGCGUGCGGC--GCUggcCGCCAa -3' miRNA: 3'- auGUUGUACGCCGuaUGGau-GCGGUg -5' |
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26999 | 3' | -52.4 | NC_005809.1 | + | 17638 | 0.68 | 0.638814 |
Target: 5'- cGCAuCGUGCGGCAg---UACGgCCACg -3' miRNA: 3'- aUGUuGUACGCCGUauggAUGC-GGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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