miRNA display CGI


Results 41 - 60 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27016 3' -62.9 NC_005832.1 + 5066 0.73 0.223901
Target:  5'- aUGACCAGGAUGCCgGUCCUGc-CUCCc -3'
miRNA:   3'- gGCUGGUCCUGCGG-CGGGACccGAGG- -5'
27016 3' -62.9 NC_005832.1 + 74135 0.73 0.203113
Target:  5'- aCGAuCCAGGACGCCGgcacaCCCcugucugucaugaUGGGgUCCa -3'
miRNA:   3'- gGCU-GGUCCUGCGGC-----GGG-------------ACCCgAGG- -5'
27016 3' -62.9 NC_005832.1 + 36062 0.75 0.155842
Target:  5'- -gGGCCGGGugGaCGCuCCUGGGCUggaCCa -3'
miRNA:   3'- ggCUGGUCCugCgGCG-GGACCCGA---GG- -5'
27016 3' -62.9 NC_005832.1 + 6036 0.76 0.134285
Target:  5'- -gGugCAGGACGgCGUgCUGGGCUgCCa -3'
miRNA:   3'- ggCugGUCCUGCgGCGgGACCCGA-GG- -5'
27016 3' -62.9 NC_005832.1 + 67070 0.78 0.104374
Target:  5'- cCUGACCuGGACGCCgagGCCCUGGaggccaCUCCg -3'
miRNA:   3'- -GGCUGGuCCUGCGG---CGGGACCc-----GAGG- -5'
27016 3' -62.9 NC_005832.1 + 94097 0.68 0.399267
Target:  5'- aCCGuCgAGGGCGaaGCCCgaaaauaggGGGUUCUg -3'
miRNA:   3'- -GGCuGgUCCUGCggCGGGa--------CCCGAGG- -5'
27016 3' -62.9 NC_005832.1 + 56325 0.68 0.424415
Target:  5'- aCgGGCCugGGGACGuaGCCCaGGGCcacugcUCCu -3'
miRNA:   3'- -GgCUGG--UCCUGCggCGGGaCCCG------AGG- -5'
27016 3' -62.9 NC_005832.1 + 86524 0.68 0.441698
Target:  5'- gCGGCCAaGaACGaaGCCUUGGGCgCCu -3'
miRNA:   3'- gGCUGGUcC-UGCggCGGGACCCGaGG- -5'
27016 3' -62.9 NC_005832.1 + 3163 0.66 0.543064
Target:  5'- cCCaGAUCAGGGCGUCGgucguaugcuuuUCCUGGGUa-- -3'
miRNA:   3'- -GG-CUGGUCCUGCGGC------------GGGACCCGagg -5'
27016 3' -62.9 NC_005832.1 + 97079 0.66 0.537306
Target:  5'- -aGGcCCAGGAgGCCcugucgaccucagacGCCCUGGaGCaggCCg -3'
miRNA:   3'- ggCU-GGUCCUgCGG---------------CGGGACC-CGa--GG- -5'
27016 3' -62.9 NC_005832.1 + 41418 0.66 0.53348
Target:  5'- aUGACUaccgAGGGCGCCuCCCUGacGGCggcggCCu -3'
miRNA:   3'- gGCUGG----UCCUGCGGcGGGAC--CCGa----GG- -5'
27016 3' -62.9 NC_005832.1 + 55833 0.66 0.53348
Target:  5'- gCCGGUCAGGGcCGCCGUgguggUGGGgUCCa -3'
miRNA:   3'- -GGCUGGUCCU-GCGGCGgg---ACCCgAGG- -5'
27016 3' -62.9 NC_005832.1 + 19713 0.66 0.523957
Target:  5'- aCCGGCCAagaccgucagggGGAcCGUCagGCCCagGGGCUUUg -3'
miRNA:   3'- -GGCUGGU------------CCU-GCGG--CGGGa-CCCGAGG- -5'
27016 3' -62.9 NC_005832.1 + 33580 0.66 0.514499
Target:  5'- aCCuACCuGGACGCCcuGCCUUuGGCcgCCa -3'
miRNA:   3'- -GGcUGGuCCUGCGG--CGGGAcCCGa-GG- -5'
27016 3' -62.9 NC_005832.1 + 20965 0.67 0.504178
Target:  5'- cCUGACCgcaaagAGGACGCCugaacugGCUCUGucCUCCa -3'
miRNA:   3'- -GGCUGG------UCCUGCGG-------CGGGACccGAGG- -5'
27016 3' -62.9 NC_005832.1 + 66995 0.67 0.485647
Target:  5'- aCGGCCAGGAcuuccaaacguccCGCUgcgaggGCCCUGgcGGCggCCg -3'
miRNA:   3'- gGCUGGUCCU-------------GCGG------CGGGAC--CCGa-GG- -5'
27016 3' -62.9 NC_005832.1 + 47078 0.67 0.477414
Target:  5'- aCGACguGGGCGCCuauguaGUCUUcgucGGGCUCg -3'
miRNA:   3'- gGCUGguCCUGCGG------CGGGA----CCCGAGg -5'
27016 3' -62.9 NC_005832.1 + 55988 0.67 0.474685
Target:  5'- gCCaGACaCGGGgcccgcguagccguACGCgGCCCUGGGUcuugCCc -3'
miRNA:   3'- -GG-CUG-GUCC--------------UGCGgCGGGACCCGa---GG- -5'
27016 3' -62.9 NC_005832.1 + 12766 0.67 0.468348
Target:  5'- gCCGugCAGGGCcCCGCacgCCaGGGCgUCa -3'
miRNA:   3'- -GGCugGUCCUGcGGCG---GGaCCCG-AGg -5'
27016 3' -62.9 NC_005832.1 + 477 0.67 0.459371
Target:  5'- -aGcCCAGGGCGgCGUCCUggucgGGGCcCCu -3'
miRNA:   3'- ggCuGGUCCUGCgGCGGGA-----CCCGaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.