miRNA display CGI


Results 1 - 20 of 23 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27016 5' -57.8 NC_005832.1 + 92058 0.66 0.737282
Target:  5'- aGAGAcuccgcucACCCUGGAcuuugacgugGUGGacaaGGACUGCAa -3'
miRNA:   3'- gUUCU--------UGGGGCCU----------CGCCg---UCUGACGU- -5'
27016 5' -57.8 NC_005832.1 + 969 0.66 0.727271
Target:  5'- -uGGAACCUgGGGGa-GCAGACgUGCGc -3'
miRNA:   3'- guUCUUGGGgCCUCgcCGUCUG-ACGU- -5'
27016 5' -57.8 NC_005832.1 + 78667 0.66 0.727271
Target:  5'- uCAAGcccGCCCCaGAGUGGCcGGC-GCAg -3'
miRNA:   3'- -GUUCu--UGGGGcCUCGCCGuCUGaCGU- -5'
27016 5' -57.8 NC_005832.1 + 42162 0.66 0.707001
Target:  5'- uCAGGAGCgUCaacagGGAGacgaGGCAGACUGUc -3'
miRNA:   3'- -GUUCUUGgGG-----CCUCg---CCGUCUGACGu -5'
27016 5' -57.8 NC_005832.1 + 39783 0.67 0.686468
Target:  5'- aGAGGccCCCCGGAGCGGUGGGuccaaccggucCUaGCGg -3'
miRNA:   3'- gUUCUu-GGGGCCUCGCCGUCU-----------GA-CGU- -5'
27016 5' -57.8 NC_005832.1 + 87436 0.67 0.686468
Target:  5'- -uGGGGCCUCGGGGaUGGCGacggcGGCUGUg -3'
miRNA:   3'- guUCUUGGGGCCUC-GCCGU-----CUGACGu -5'
27016 5' -57.8 NC_005832.1 + 7948 0.67 0.65534
Target:  5'- aCGAG-ACCCUGGGGCuGGCGG-CgGCc -3'
miRNA:   3'- -GUUCuUGGGGCCUCG-CCGUCuGaCGu -5'
27016 5' -57.8 NC_005832.1 + 23177 0.67 0.65534
Target:  5'- --cGGAUCCCuGAGCcacGCAGACUGUg -3'
miRNA:   3'- guuCUUGGGGcCUCGc--CGUCUGACGu -5'
27016 5' -57.8 NC_005832.1 + 62304 0.67 0.65534
Target:  5'- uCGGGAGCCuuGGcGUaagaGGCAGAgUGCu -3'
miRNA:   3'- -GUUCUUGGggCCuCG----CCGUCUgACGu -5'
27016 5' -57.8 NC_005832.1 + 46177 0.67 0.65534
Target:  5'- aCAGGGACCCCuGGGCGGaccuGACUu-- -3'
miRNA:   3'- -GUUCUUGGGGcCUCGCCgu--CUGAcgu -5'
27016 5' -57.8 NC_005832.1 + 66907 0.67 0.644914
Target:  5'- aAAGAGCCaCCGGucccaucGUGGUAGACguacucggGCAg -3'
miRNA:   3'- gUUCUUGG-GGCCu------CGCCGUCUGa-------CGU- -5'
27016 5' -57.8 NC_005832.1 + 42420 0.68 0.634476
Target:  5'- cCGAGGACCCCGuGGCGGaucuGGCcaaGCAc -3'
miRNA:   3'- -GUUCUUGGGGCcUCGCCgu--CUGa--CGU- -5'
27016 5' -57.8 NC_005832.1 + 32427 0.68 0.612562
Target:  5'- aCGGGGACCCUGGAcagcgagugucccGUGGC-GACUGg- -3'
miRNA:   3'- -GUUCUUGGGGCCU-------------CGCCGuCUGACgu -5'
27016 5' -57.8 NC_005832.1 + 39280 0.68 0.603187
Target:  5'- aAGGGGCCCCGcGGGCG-CAGACg--- -3'
miRNA:   3'- gUUCUUGGGGC-CUCGCcGUCUGacgu -5'
27016 5' -57.8 NC_005832.1 + 36266 0.68 0.592791
Target:  5'- aGAGGACCCuCGcGGCGGCcu-CUGCGa -3'
miRNA:   3'- gUUCUUGGG-GCcUCGCCGucuGACGU- -5'
27016 5' -57.8 NC_005832.1 + 95513 0.69 0.572096
Target:  5'- uCGAGGugUCCGGAGCGGCcaggguccccgGGACa--- -3'
miRNA:   3'- -GUUCUugGGGCCUCGCCG-----------UCUGacgu -5'
27016 5' -57.8 NC_005832.1 + 53987 0.69 0.531289
Target:  5'- gCAAGAccuucaugGCCCUGGAGCuguggaggaGGCugGGGCUGCc -3'
miRNA:   3'- -GUUCU--------UGGGGCCUCG---------CCG--UCUGACGu -5'
27016 5' -57.8 NC_005832.1 + 5598 0.7 0.507311
Target:  5'- aCGGGGACCacaUGGAGaCGGCGGACggaucuccccuggGCAg -3'
miRNA:   3'- -GUUCUUGGg--GCCUC-GCCGUCUGa------------CGU- -5'
27016 5' -57.8 NC_005832.1 + 23419 0.7 0.501388
Target:  5'- gGAGGucGCCuUUGGAGCGcCAGACUGCGu -3'
miRNA:   3'- gUUCU--UGG-GGCCUCGCcGUCUGACGU- -5'
27016 5' -57.8 NC_005832.1 + 95356 0.7 0.501388
Target:  5'- cCGAGGACCguaaagCCGGGGCGGUcuGGGuuCUGCGc -3'
miRNA:   3'- -GUUCUUGG------GGCCUCGCCG--UCU--GACGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.