miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27017 3' -58.3 NC_005832.1 + 54138 0.66 0.782959
Target:  5'- cGACGCCCUGCcCGagGaccUGUacgUGACGGg -3'
miRNA:   3'- -CUGCGGGGCGuGCagU---ACGa--GCUGCC- -5'
27017 3' -58.3 NC_005832.1 + 87658 0.66 0.754808
Target:  5'- uGAgGUCCCGCACGUCcUGacuuUCGcAgGGg -3'
miRNA:   3'- -CUgCGGGGCGUGCAGuACg---AGC-UgCC- -5'
27017 3' -58.3 NC_005832.1 + 1128 0.66 0.754808
Target:  5'- cGGCGUCCCGCGagGaCA-GgUCGGCGGc -3'
miRNA:   3'- -CUGCGGGGCGUg-CaGUaCgAGCUGCC- -5'
27017 3' -58.3 NC_005832.1 + 94300 0.66 0.745198
Target:  5'- --gGaCCUGCAUGUCAgGCUCGAUGu -3'
miRNA:   3'- cugCgGGGCGUGCAGUaCGAGCUGCc -5'
27017 3' -58.3 NC_005832.1 + 32515 0.67 0.705863
Target:  5'- uGAUGuCCuCCGUggGUCuuagGUGCUUGGCGGc -3'
miRNA:   3'- -CUGC-GG-GGCGugCAG----UACGAGCUGCC- -5'
27017 3' -58.3 NC_005832.1 + 19971 0.67 0.705863
Target:  5'- --aGCCCgG-ACGUCAUGCa-GGCGGu -3'
miRNA:   3'- cugCGGGgCgUGCAGUACGagCUGCC- -5'
27017 3' -58.3 NC_005832.1 + 44643 0.68 0.665536
Target:  5'- aGCGUCCUcUAC-UCggGCUCGACGGg -3'
miRNA:   3'- cUGCGGGGcGUGcAGuaCGAGCUGCC- -5'
27017 3' -58.3 NC_005832.1 + 65808 0.68 0.663504
Target:  5'- gGACGuCCCCGCGCc-CGUGCUggauccccugaaGACGGc -3'
miRNA:   3'- -CUGC-GGGGCGUGcaGUACGAg-----------CUGCC- -5'
27017 3' -58.3 NC_005832.1 + 4831 0.68 0.634977
Target:  5'- -uCGCCCCGUACucugCGUGCgacgcgUGugGGg -3'
miRNA:   3'- cuGCGGGGCGUGca--GUACGa-----GCugCC- -5'
27017 3' -58.3 NC_005832.1 + 2177 0.69 0.601346
Target:  5'- gGACGCCaCGgACGUCAUGgUccagcaaauugccaCGGCGGg -3'
miRNA:   3'- -CUGCGGgGCgUGCAGUACgA--------------GCUGCC- -5'
27017 3' -58.3 NC_005832.1 + 97176 0.69 0.594235
Target:  5'- gGACuCCCUGgACGUCAagaaGCUCGACaGGc -3'
miRNA:   3'- -CUGcGGGGCgUGCAGUa---CGAGCUG-CC- -5'
27017 3' -58.3 NC_005832.1 + 12886 0.69 0.553929
Target:  5'- cGGgGCCCUGCACGgCGUGgaCGugGu -3'
miRNA:   3'- -CUgCGGGGCGUGCaGUACgaGCugCc -5'
27017 3' -58.3 NC_005832.1 + 79015 0.77 0.222658
Target:  5'- uGACGCCUCuCACGUCAUGCagacCGACGa -3'
miRNA:   3'- -CUGCGGGGcGUGCAGUACGa---GCUGCc -5'
27017 3' -58.3 NC_005832.1 + 12656 0.77 0.217285
Target:  5'- -cCGCCCCGUccACGUCGUGCUUGGaGGc -3'
miRNA:   3'- cuGCGGGGCG--UGCAGUACGAGCUgCC- -5'
27017 3' -58.3 NC_005832.1 + 1561 0.97 0.009246
Target:  5'- cGACGCCCCGCACGUCAUG-UCGACGGc -3'
miRNA:   3'- -CUGCGGGGCGUGCAGUACgAGCUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.