Results 1 - 20 of 31 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27019 | 3' | -53.5 | NC_005832.1 | + | 75750 | 0.74 | 0.554449 |
Target: 5'- cACCgCCAGGGCCGU---GAGGUCCGc -3' miRNA: 3'- cUGG-GGUCCUGGCAgaaUUUCAGGCu -5' |
|||||||
27019 | 3' | -53.5 | NC_005832.1 | + | 22027 | 0.66 | 0.93413 |
Target: 5'- uGAUCCUaaaGGGAuCCGUCUUAAAGUa--- -3' miRNA: 3'- -CUGGGG---UCCU-GGCAGAAUUUCAggcu -5' |
|||||||
27019 | 3' | -53.5 | NC_005832.1 | + | 5209 | 0.66 | 0.93413 |
Target: 5'- cGACCCC---GCCGUCga-GGGUCUGGu -3' miRNA: 3'- -CUGGGGuccUGGCAGaauUUCAGGCU- -5' |
|||||||
27019 | 3' | -53.5 | NC_005832.1 | + | 66917 | 0.66 | 0.932039 |
Target: 5'- gGACCCCAGc-CCGUCUaccccaaacuGUCUGAg -3' miRNA: 3'- -CUGGGGUCcuGGCAGAauuu------CAGGCU- -5' |
|||||||
27019 | 3' | -53.5 | NC_005832.1 | + | 41291 | 0.66 | 0.923262 |
Target: 5'- -uCCCguGGACC----UAAAGUCCGAc -3' miRNA: 3'- cuGGGguCCUGGcagaAUUUCAGGCU- -5' |
|||||||
27019 | 3' | -53.5 | NC_005832.1 | + | 79821 | 0.67 | 0.913827 |
Target: 5'- aGACCCCGGuuaacgcggugacguGGCCGUgUUucaGAGGUCCc- -3' miRNA: 3'- -CUGGGGUC---------------CUGGCAgAA---UUUCAGGcu -5' |
|||||||
27019 | 3' | -53.5 | NC_005832.1 | + | 47132 | 0.67 | 0.905034 |
Target: 5'- uGGCCCCAGGGcacucgcuuuCCGUCggcGGGGUCa-- -3' miRNA: 3'- -CUGGGGUCCU----------GGCAGaa-UUUCAGgcu -5' |
|||||||
27019 | 3' | -53.5 | NC_005832.1 | + | 80893 | 0.67 | 0.884536 |
Target: 5'- aGGCCCCGGGACCcUUUg-----CCGAa -3' miRNA: 3'- -CUGGGGUCCUGGcAGAauuucaGGCU- -5' |
|||||||
27019 | 3' | -53.5 | NC_005832.1 | + | 4625 | 0.68 | 0.837203 |
Target: 5'- cGACCCCAGGAUgGgaUCggcgGGGG-CCGAc -3' miRNA: 3'- -CUGGGGUCCUGgC--AGaa--UUUCaGGCU- -5' |
|||||||
27019 | 3' | -53.5 | NC_005832.1 | + | 16625 | 0.71 | 0.712612 |
Target: 5'- uGGCUCCAGGACCGUgUUG----CCGAc -3' miRNA: 3'- -CUGGGGUCCUGGCAgAAUuucaGGCU- -5' |
|||||||
27019 | 3' | -53.5 | NC_005832.1 | + | 98326 | 0.69 | 0.814352 |
Target: 5'- gGGCCUCGGGucaguuaggcaaacuGCCGUCUcc--GUCCGAc -3' miRNA: 3'- -CUGGGGUCC---------------UGGCAGAauuuCAGGCU- -5' |
|||||||
27019 | 3' | -53.5 | NC_005832.1 | + | 5659 | 0.69 | 0.819738 |
Target: 5'- cGACgCCCGGGACCcGUCggu-GGuUCUGAg -3' miRNA: 3'- -CUG-GGGUCCUGG-CAGaauuUC-AGGCU- -5' |
|||||||
27019 | 3' | -53.5 | NC_005832.1 | + | 54146 | 0.69 | 0.819738 |
Target: 5'- uGCCCgAGGACCuGUacgUGAcgGGUCCGGc -3' miRNA: 3'- cUGGGgUCCUGG-CAga-AUU--UCAGGCU- -5' |
|||||||
27019 | 3' | -53.5 | NC_005832.1 | + | 87633 | 0.69 | 0.828566 |
Target: 5'- aGGCCCCgcAGGACgggaUGUCUuuUGAGGUCCc- -3' miRNA: 3'- -CUGGGG--UCCUG----GCAGA--AUUUCAGGcu -5' |
|||||||
27019 | 3' | -53.5 | NC_005832.1 | + | 6811 | 0.68 | 0.836348 |
Target: 5'- aACCCCAGGGaggUGUUUUuucacgcAAAGUCCGGc -3' miRNA: 3'- cUGGGGUCCUg--GCAGAA-------UUUCAGGCU- -5' |
|||||||
27019 | 3' | -53.5 | NC_005832.1 | + | 47250 | 0.66 | 0.938684 |
Target: 5'- uGCCCUGGGGCCaggacccuccaguGUCUgacGAGcCCGAc -3' miRNA: 3'- cUGGGGUCCUGG-------------CAGAau-UUCaGGCU- -5' |
|||||||
27019 | 3' | -53.5 | NC_005832.1 | + | 78772 | 0.73 | 0.585894 |
Target: 5'- aACCCCGGGAUgGUUUUGAugaaaGGUCCa- -3' miRNA: 3'- cUGGGGUCCUGgCAGAAUU-----UCAGGcu -5' |
|||||||
27019 | 3' | -53.5 | NC_005832.1 | + | 20110 | 0.73 | 0.596458 |
Target: 5'- cGAUCCuCAGGACCGcCUgcaUGAcGUCCGGg -3' miRNA: 3'- -CUGGG-GUCCUGGCaGA---AUUuCAGGCU- -5' |
|||||||
27019 | 3' | -53.5 | NC_005832.1 | + | 96941 | 0.71 | 0.68127 |
Target: 5'- -uUCCCAGGAgCC-UCUUGAAGcCCGAc -3' miRNA: 3'- cuGGGGUCCU-GGcAGAAUUUCaGGCU- -5' |
|||||||
27019 | 3' | -53.5 | NC_005832.1 | + | 72687 | 0.71 | 0.712612 |
Target: 5'- gGGCCCCacguccccacgGGGACCGUCUacgcGUCCa- -3' miRNA: 3'- -CUGGGG-----------UCCUGGCAGAauuuCAGGcu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home