miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27021 3' -54 NC_005832.1 + 53203 0.66 0.906617
Target:  5'- ----gGCCCuGUAGGCCA--GGGCAg- -3'
miRNA:   3'- caucaUGGG-CAUCCGGUagUCCGUag -5'
27021 3' -54 NC_005832.1 + 54890 0.67 0.864024
Target:  5'- -aAGUACCUGUcgacguccgccgccAGGCaCAggccgguccucucgCAGGCGUCg -3'
miRNA:   3'- caUCAUGGGCA--------------UCCG-GUa-------------GUCCGUAG- -5'
27021 3' -54 NC_005832.1 + 102639 0.67 0.838353
Target:  5'- aUGGUcucgaGCUCGgAGGCCGcagUCAGGCAgUCg -3'
miRNA:   3'- cAUCA-----UGGGCaUCCGGU---AGUCCGU-AG- -5'
27021 3' -54 NC_005832.1 + 72789 0.68 0.792875
Target:  5'- -cGGgACCCuuUGGGCCGUCGGGCc-- -3'
miRNA:   3'- caUCaUGGGc-AUCCGGUAGUCCGuag -5'
27021 3' -54 NC_005832.1 + 98035 0.68 0.792875
Target:  5'- -aAGacuauCCCGaAGGUCcUCAGGCGUCg -3'
miRNA:   3'- caUCau---GGGCaUCCGGuAGUCCGUAG- -5'
27021 3' -54 NC_005832.1 + 55942 0.68 0.792875
Target:  5'- aGUAGcUGCCCGUGucGCCGUCgAGGUAa- -3'
miRNA:   3'- -CAUC-AUGGGCAUc-CGGUAG-UCCGUag -5'
27021 3' -54 NC_005832.1 + 87248 0.69 0.773494
Target:  5'- -gAGaGCCUGaGGGCCAUggucaAGGCGUCu -3'
miRNA:   3'- caUCaUGGGCaUCCGGUAg----UCCGUAG- -5'
27021 3' -54 NC_005832.1 + 26465 0.69 0.773494
Target:  5'- --cGUcCCCGgcgAGGCCAcCGGGCAg- -3'
miRNA:   3'- cauCAuGGGCa--UCCGGUaGUCCGUag -5'
27021 3' -54 NC_005832.1 + 56471 0.69 0.753555
Target:  5'- cGUGGUgagguccagGCCCG-AGGCCuu--GGCAUCu -3'
miRNA:   3'- -CAUCA---------UGGGCaUCCGGuaguCCGUAG- -5'
27021 3' -54 NC_005832.1 + 38651 0.7 0.722787
Target:  5'- -gAGUACCCGUGGGUCGUgaccgAGGaccuCAUCg -3'
miRNA:   3'- caUCAUGGGCAUCCGGUAg----UCC----GUAG- -5'
27021 3' -54 NC_005832.1 + 91258 0.7 0.712344
Target:  5'- ----aGCCUGUGGGCCuugguGGCGUCa -3'
miRNA:   3'- caucaUGGGCAUCCGGuagu-CCGUAG- -5'
27021 3' -54 NC_005832.1 + 43931 0.72 0.605463
Target:  5'- -aGGgcCCCGUGGGCCAUCu--CGUCg -3'
miRNA:   3'- caUCauGGGCAUCCGGUAGuccGUAG- -5'
27021 3' -54 NC_005832.1 + 89373 0.72 0.594744
Target:  5'- -cAGUcCCUGaAGGCCGUgUAGGCGUCg -3'
miRNA:   3'- caUCAuGGGCaUCCGGUA-GUCCGUAG- -5'
27021 3' -54 NC_005832.1 + 71158 0.74 0.460747
Target:  5'- -cAGuUugCCGgagAGGCCGUCAGGcCGUCc -3'
miRNA:   3'- caUC-AugGGCa--UCCGGUAGUCC-GUAG- -5'
27021 3' -54 NC_005832.1 + 3357 1.09 0.0026
Target:  5'- aGUAGUACCCGUAGGCCAUCAGGCAUCc -3'
miRNA:   3'- -CAUCAUGGGCAUCCGGUAGUCCGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.