Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27021 | 5' | -51.4 | NC_005832.1 | + | 103495 | 0.77 | 0.523426 |
Target: 5'- aCGGGGCUGA-CGUACCCcuuGGAAGGGu -3' miRNA: 3'- cGCUCCGGCUaGUAUGGGu--CCUUUUC- -5' |
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27021 | 5' | -51.4 | NC_005832.1 | + | 11555 | 0.68 | 0.942538 |
Target: 5'- aGCGuGGCCGAaaggGCCaAGGAAAAa -3' miRNA: 3'- -CGCuCCGGCUaguaUGGgUCCUUUUc -5' |
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27021 | 5' | -51.4 | NC_005832.1 | + | 29635 | 0.68 | 0.921165 |
Target: 5'- aGgGAGGCU----AUAUCCAGGGGAGGg -3' miRNA: 3'- -CgCUCCGGcuagUAUGGGUCCUUUUC- -5' |
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27021 | 5' | -51.4 | NC_005832.1 | + | 81137 | 0.7 | 0.881217 |
Target: 5'- aGgGAGGCCGAggCGUACUCuuGGAccGGg -3' miRNA: 3'- -CgCUCCGGCUa-GUAUGGGu-CCUuuUC- -5' |
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27021 | 5' | -51.4 | NC_005832.1 | + | 48201 | 0.7 | 0.849623 |
Target: 5'- uGCG-GGUgGAUCAgGCUgGGGAAGGGa -3' miRNA: 3'- -CGCuCCGgCUAGUaUGGgUCCUUUUC- -5' |
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27021 | 5' | -51.4 | NC_005832.1 | + | 36213 | 0.71 | 0.823604 |
Target: 5'- aGCGccAGGgCGGUCGUgguccaGCCCAGGAGc-- -3' miRNA: 3'- -CGC--UCCgGCUAGUA------UGGGUCCUUuuc -5' |
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27021 | 5' | -51.4 | NC_005832.1 | + | 98834 | 0.67 | 0.955816 |
Target: 5'- gGCGgaAGGCaccaGAUCAUGCCCGGc----- -3' miRNA: 3'- -CGC--UCCGg---CUAGUAUGGGUCcuuuuc -5' |
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27021 | 5' | -51.4 | NC_005832.1 | + | 11308 | 0.68 | 0.926907 |
Target: 5'- cGCgGAGGCC-AUCAUGgCCAGGu---- -3' miRNA: 3'- -CG-CUCCGGcUAGUAUgGGUCCuuuuc -5' |
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27021 | 5' | -51.4 | NC_005832.1 | + | 47933 | 0.7 | 0.873672 |
Target: 5'- uCGAGGCCGA-CGacUACCCcgAGGcgGAGg -3' miRNA: 3'- cGCUCCGGCUaGU--AUGGG--UCCuuUUC- -5' |
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27021 | 5' | -51.4 | NC_005832.1 | + | 47704 | 0.72 | 0.776502 |
Target: 5'- cGCGAGGCCG-----GCCaAGGAGAGGa -3' miRNA: 3'- -CGCUCCGGCuaguaUGGgUCCUUUUC- -5' |
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27021 | 5' | -51.4 | NC_005832.1 | + | 5324 | 0.75 | 0.619027 |
Target: 5'- gGCGGGGUCG-UCGUGCuCCAGGGc--- -3' miRNA: 3'- -CGCUCCGGCuAGUAUG-GGUCCUuuuc -5' |
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27021 | 5' | -51.4 | NC_005832.1 | + | 97634 | 0.67 | 0.955816 |
Target: 5'- aGCuGGGuuGc-CAUGCCCAGGAAccGg -3' miRNA: 3'- -CGcUCCggCuaGUAUGGGUCCUUuuC- -5' |
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27021 | 5' | -51.4 | NC_005832.1 | + | 5762 | 0.74 | 0.651386 |
Target: 5'- aCGAGGguCUGGUCAcccUGCCCAGGGGAGa -3' miRNA: 3'- cGCUCC--GGCUAGU---AUGGGUCCUUUUc -5' |
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27021 | 5' | -51.4 | NC_005832.1 | + | 23883 | 0.68 | 0.926907 |
Target: 5'- uGCGAGGuuGGUCGUGaccuCCCAGu----- -3' miRNA: 3'- -CGCUCCggCUAGUAU----GGGUCcuuuuc -5' |
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27021 | 5' | -51.4 | NC_005832.1 | + | 39470 | 0.66 | 0.975757 |
Target: 5'- gGCccuGGUCGccGUCGUcCCCGGGggGGGu -3' miRNA: 3'- -CGcu-CCGGC--UAGUAuGGGUCCuuUUC- -5' |
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27021 | 5' | -51.4 | NC_005832.1 | + | 3320 | 1.1 | 0.004492 |
Target: 5'- gGCGAGGCCGAUCAUACCCAGGAAAAGc -3' miRNA: 3'- -CGCUCCGGCUAGUAUGGGUCCUUUUC- -5' |
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27021 | 5' | -51.4 | NC_005832.1 | + | 19730 | 0.66 | 0.966837 |
Target: 5'- -gGGGGaCCG-UCAgGCCCAGGGGc-- -3' miRNA: 3'- cgCUCC-GGCuAGUaUGGGUCCUUuuc -5' |
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27021 | 5' | -51.4 | NC_005832.1 | + | 102366 | 0.67 | 0.963405 |
Target: 5'- cCGAGG-CGGUCGUAgCCAuGGAGGc- -3' miRNA: 3'- cGCUCCgGCUAGUAUgGGU-CCUUUuc -5' |
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27021 | 5' | -51.4 | NC_005832.1 | + | 94781 | 0.67 | 0.951647 |
Target: 5'- cGCGAgGGCCGA-CGcgGCCUgaucGGGAGAAc -3' miRNA: 3'- -CGCU-CCGGCUaGUa-UGGG----UCCUUUUc -5' |
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27021 | 5' | -51.4 | NC_005832.1 | + | 41807 | 0.67 | 0.945844 |
Target: 5'- cGUGAGGUaCGAgccccCGUGCCCagacggcaaacccuGGGAGAAGc -3' miRNA: 3'- -CGCUCCG-GCUa----GUAUGGG--------------UCCUUUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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