miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27021 5' -51.4 NC_005832.1 + 48201 0.7 0.849623
Target:  5'- uGCG-GGUgGAUCAgGCUgGGGAAGGGa -3'
miRNA:   3'- -CGCuCCGgCUAGUaUGGgUCCUUUUC- -5'
27021 5' -51.4 NC_005832.1 + 49588 0.68 0.942538
Target:  5'- -gGAGGUC---CAUGCCCGGGAAGc- -3'
miRNA:   3'- cgCUCCGGcuaGUAUGGGUCCUUUuc -5'
27021 5' -51.4 NC_005832.1 + 51736 0.69 0.895563
Target:  5'- gGCGucaaAGGCCGccugagcCAUACCCAGGGc--- -3'
miRNA:   3'- -CGC----UCCGGCua-----GUAUGGGUCCUuuuc -5'
27021 5' -51.4 NC_005832.1 + 52802 0.66 0.966837
Target:  5'- cCGGGGCCaugC-UGCCCAGGGGc-- -3'
miRNA:   3'- cGCUCCGGcuaGuAUGGGUCCUUuuc -5'
27021 5' -51.4 NC_005832.1 + 78785 0.7 0.857868
Target:  5'- -gGGGGCUGcaGUgGUGCCCGGGGAc-- -3'
miRNA:   3'- cgCUCCGGC--UAgUAUGGGUCCUUuuc -5'
27021 5' -51.4 NC_005832.1 + 79292 0.66 0.978298
Target:  5'- aGgGAGGCCGcUCc-ACCCAGGc---- -3'
miRNA:   3'- -CgCUCCGGCuAGuaUGGGUCCuuuuc -5'
27021 5' -51.4 NC_005832.1 + 81137 0.7 0.881217
Target:  5'- aGgGAGGCCGAggCGUACUCuuGGAccGGg -3'
miRNA:   3'- -CgCUCCGGCUa-GUAUGGGu-CCUuuUC- -5'
27021 5' -51.4 NC_005832.1 + 84141 0.69 0.908888
Target:  5'- aCGGGaGCgGAcagCAUcgcGCCCAGGGAAGGu -3'
miRNA:   3'- cGCUC-CGgCUa--GUA---UGGGUCCUUUUC- -5'
27021 5' -51.4 NC_005832.1 + 93604 0.71 0.795845
Target:  5'- aGCGGGaG-CGAUCAUGCUCAGGGc--- -3'
miRNA:   3'- -CGCUC-CgGCUAGUAUGGGUCCUuuuc -5'
27021 5' -51.4 NC_005832.1 + 94031 0.72 0.756584
Target:  5'- -aGGGGCCGA-CAUG-CCGGGAAAGa -3'
miRNA:   3'- cgCUCCGGCUaGUAUgGGUCCUUUUc -5'
27021 5' -51.4 NC_005832.1 + 94781 0.67 0.951647
Target:  5'- cGCGAgGGCCGA-CGcgGCCUgaucGGGAGAAc -3'
miRNA:   3'- -CGCU-CCGGCUaGUa-UGGG----UCCUUUUc -5'
27021 5' -51.4 NC_005832.1 + 97634 0.67 0.955816
Target:  5'- aGCuGGGuuGc-CAUGCCCAGGAAccGg -3'
miRNA:   3'- -CGcUCCggCuaGUAUGGGUCCUUuuC- -5'
27021 5' -51.4 NC_005832.1 + 98834 0.67 0.955816
Target:  5'- gGCGgaAGGCaccaGAUCAUGCCCGGc----- -3'
miRNA:   3'- -CGC--UCCGg---CUAGUAUGGGUCcuuuuc -5'
27021 5' -51.4 NC_005832.1 + 102366 0.67 0.963405
Target:  5'- cCGAGG-CGGUCGUAgCCAuGGAGGc- -3'
miRNA:   3'- cGCUCCgGCUAGUAUgGGU-CCUUUuc -5'
27021 5' -51.4 NC_005832.1 + 103495 0.77 0.523426
Target:  5'- aCGGGGCUGA-CGUACCCcuuGGAAGGGu -3'
miRNA:   3'- cGCUCCGGCUaGUAUGGGu--CCUUUUC- -5'
27021 5' -51.4 NC_005832.1 + 103831 0.66 0.978298
Target:  5'- -gGAGGCCuGGUUAgucCCCGGGGu--- -3'
miRNA:   3'- cgCUCCGG-CUAGUau-GGGUCCUuuuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.