miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27022 5' -55.8 NC_005832.1 + 12664 0.66 0.855256
Target:  5'- --aUCCGccGCCGCCCCGUccACGUcgugcuuggaGGCa -3'
miRNA:   3'- caaAGGU--UGGCGGGGCGucUGCA----------CUG- -5'
27022 5' -55.8 NC_005832.1 + 90232 0.66 0.847143
Target:  5'- ---gCCcAUCGuCCCCGCAGACGccGAa -3'
miRNA:   3'- caaaGGuUGGC-GGGGCGUCUGCa-CUg -5'
27022 5' -55.8 NC_005832.1 + 36091 0.66 0.847143
Target:  5'- ----aCGACCGCCCuggCGCuGGCGUcGGCc -3'
miRNA:   3'- caaagGUUGGCGGG---GCGuCUGCA-CUG- -5'
27022 5' -55.8 NC_005832.1 + 87629 0.66 0.830306
Target:  5'- --gUCCAG--GCCCCGCAGgACGgGAUg -3'
miRNA:   3'- caaAGGUUggCGGGGCGUC-UGCaCUG- -5'
27022 5' -55.8 NC_005832.1 + 39566 0.66 0.830306
Target:  5'- ---cCCAGCCGCuCCCaCGGACccGACc -3'
miRNA:   3'- caaaGGUUGGCG-GGGcGUCUGcaCUG- -5'
27022 5' -55.8 NC_005832.1 + 34949 0.66 0.821598
Target:  5'- --gUCCGGCCaUCCCGgGGcacuCGUGGCa -3'
miRNA:   3'- caaAGGUUGGcGGGGCgUCu---GCACUG- -5'
27022 5' -55.8 NC_005832.1 + 54991 0.66 0.821598
Target:  5'- ---cCCGACgGCCacggagGUAGACGUGGCc -3'
miRNA:   3'- caaaGGUUGgCGGgg----CGUCUGCACUG- -5'
27022 5' -55.8 NC_005832.1 + 31277 0.66 0.821598
Target:  5'- -cUUCCAGCCGCCaCGUcggucaGGACGgGAg -3'
miRNA:   3'- caAAGGUUGGCGGgGCG------UCUGCaCUg -5'
27022 5' -55.8 NC_005832.1 + 58518 0.67 0.812707
Target:  5'- --gUCC-GCCGCCCgGCAGAUuaUGAa -3'
miRNA:   3'- caaAGGuUGGCGGGgCGUCUGc-ACUg -5'
27022 5' -55.8 NC_005832.1 + 46810 0.69 0.66392
Target:  5'- ---aCCGugUGCgCCUGCAGGCGccUGGCa -3'
miRNA:   3'- caaaGGUugGCG-GGGCGUCUGC--ACUG- -5'
27022 5' -55.8 NC_005832.1 + 65745 0.69 0.65342
Target:  5'- --gUCCAGgcCCGaCCUgGCGGACGUGGg -3'
miRNA:   3'- caaAGGUU--GGC-GGGgCGUCUGCACUg -5'
27022 5' -55.8 NC_005832.1 + 12373 0.7 0.632374
Target:  5'- cGUUUCCGucuGCCGUCUgGCAGAUG-GAa -3'
miRNA:   3'- -CAAAGGU---UGGCGGGgCGUCUGCaCUg -5'
27022 5' -55.8 NC_005832.1 + 75013 0.7 0.621847
Target:  5'- cUUUUCGGCCaggGCCCCGUAGAgG-GACc -3'
miRNA:   3'- cAAAGGUUGG---CGGGGCGUCUgCaCUG- -5'
27022 5' -55.8 NC_005832.1 + 39938 0.7 0.611327
Target:  5'- --aUCCAGgCGCCCCGCuaGGACcGguugGACc -3'
miRNA:   3'- caaAGGUUgGCGGGGCG--UCUG-Ca---CUG- -5'
27022 5' -55.8 NC_005832.1 + 7634 0.72 0.498315
Target:  5'- -cUUCaAGCUgaggauaaGUCCCGCGGACGUGGCg -3'
miRNA:   3'- caAAGgUUGG--------CGGGGCGUCUGCACUG- -5'
27022 5' -55.8 NC_005832.1 + 71527 0.72 0.497325
Target:  5'- -cUUCC-GCCGCCCUcguggcccugucuGCAGuCGUGGCa -3'
miRNA:   3'- caAAGGuUGGCGGGG-------------CGUCuGCACUG- -5'
27022 5' -55.8 NC_005832.1 + 4917 1.1 0.001552
Target:  5'- cGUUUCCAACCGCCCCGCAGACGUGACa -3'
miRNA:   3'- -CAAAGGUUGGCGGGGCGUCUGCACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.