miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27023 5' -55.4 NC_005832.1 + 53340 0.66 0.889235
Target:  5'- aCGUgugGAAGGcugcccuggccuacaGGGccaugGAuuucgagcCCAUGACGGGCu -3'
miRNA:   3'- -GCAa--CUUCC---------------CCCa----CU--------GGUACUGCCCG- -5'
27023 5' -55.4 NC_005832.1 + 65288 0.66 0.880053
Target:  5'- aCGU---AGGGGGcacgggacccaacagGACCAUGGucaGGGCg -3'
miRNA:   3'- -GCAacuUCCCCCa--------------CUGGUACUg--CCCG- -5'
27023 5' -55.4 NC_005832.1 + 100449 0.66 0.878605
Target:  5'- aCGUUGGAGGacgagccGGUGACCGUcccccugGACaGGUu -3'
miRNA:   3'- -GCAACUUCCc------CCACUGGUA-------CUGcCCG- -5'
27023 5' -55.4 NC_005832.1 + 11029 0.66 0.864407
Target:  5'- uCGUUGGucauGGGGGUGcCCGUua-GGaGCa -3'
miRNA:   3'- -GCAACUu---CCCCCACuGGUAcugCC-CG- -5'
27023 5' -55.4 NC_005832.1 + 16770 0.66 0.856616
Target:  5'- gCGUUccuGGGGuUGACCAUGugGacuggGGCg -3'
miRNA:   3'- -GCAAcuuCCCCcACUGGUACugC-----CCG- -5'
27023 5' -55.4 NC_005832.1 + 42303 0.66 0.856616
Target:  5'- ---cGAGGGaGGccGUGGCCAUGuguGGGCu -3'
miRNA:   3'- gcaaCUUCC-CC--CACUGGUACug-CCCG- -5'
27023 5' -55.4 NC_005832.1 + 53260 0.66 0.856616
Target:  5'- -uUUGAuGGGGGUGACaCGUucaGGGUc -3'
miRNA:   3'- gcAACUuCCCCCACUG-GUAcugCCCG- -5'
27023 5' -55.4 NC_005832.1 + 46429 0.67 0.848615
Target:  5'- uGUggGAcaAGGcGGUGGCCGUGGCcaaGGCg -3'
miRNA:   3'- gCAa-CU--UCCcCCACUGGUACUGc--CCG- -5'
27023 5' -55.4 NC_005832.1 + 35308 0.67 0.814644
Target:  5'- ---aGAGGGaGGGaUGcCCGUGACuGGCu -3'
miRNA:   3'- gcaaCUUCC-CCC-ACuGGUACUGcCCG- -5'
27023 5' -55.4 NC_005832.1 + 55743 0.68 0.796592
Target:  5'- uGUgGGAGcGGGaGUGGCUggGGCGGcGCu -3'
miRNA:   3'- gCAaCUUC-CCC-CACUGGuaCUGCC-CG- -5'
27023 5' -55.4 NC_005832.1 + 99832 0.69 0.739036
Target:  5'- ---gGucGGGGGUGAgauCCAUGACGuacugguuGGCa -3'
miRNA:   3'- gcaaCuuCCCCCACU---GGUACUGC--------CCG- -5'
27023 5' -55.4 NC_005832.1 + 7845 0.69 0.729048
Target:  5'- ---gGAGGGuGGGUGGCgGUGACaaaGGGg -3'
miRNA:   3'- gcaaCUUCC-CCCACUGgUACUG---CCCg -5'
27023 5' -55.4 NC_005832.1 + 10344 0.69 0.729048
Target:  5'- ---gGAGGGcGGGUucCCAUGACaGGCu -3'
miRNA:   3'- gcaaCUUCC-CCCAcuGGUACUGcCCG- -5'
27023 5' -55.4 NC_005832.1 + 2462 0.69 0.718972
Target:  5'- aCGUcuaUGAuGaGGGUGACC-UGACaGGGCu -3'
miRNA:   3'- -GCA---ACUuCcCCCACUGGuACUG-CCCG- -5'
27023 5' -55.4 NC_005832.1 + 93826 0.72 0.543326
Target:  5'- gGUUGAuccgguuuGGGGGGauugGGCCcggGugGGGCc -3'
miRNA:   3'- gCAACU--------UCCCCCa---CUGGua-CugCCCG- -5'
27023 5' -55.4 NC_005832.1 + 19631 0.74 0.445815
Target:  5'- cCGUUGAAGGuGGGaGACgAgcGGCGGGUg -3'
miRNA:   3'- -GCAACUUCC-CCCaCUGgUa-CUGCCCG- -5'
27023 5' -55.4 NC_005832.1 + 12099 0.79 0.222831
Target:  5'- uGUUGGAGGGGGcgGGgUA-GACGGGCa -3'
miRNA:   3'- gCAACUUCCCCCa-CUgGUaCUGCCCG- -5'
27023 5' -55.4 NC_005832.1 + 33091 0.81 0.191564
Target:  5'- uGUUGAccGGGGUGGCCGuccaguuccUGAUGGGCc -3'
miRNA:   3'- gCAACUucCCCCACUGGU---------ACUGCCCG- -5'
27023 5' -55.4 NC_005832.1 + 5607 1.13 0.00129
Target:  5'- aCGUUGAAGGGGGUGACCAUGACGGGCa -3'
miRNA:   3'- -GCAACUUCCCCCACUGGUACUGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.