Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27024 | 3' | -55.9 | NC_005832.1 | + | 91987 | 0.78 | 0.20755 |
Target: 5'- cGGACUCUAUCCUGUcugccaccGCCCUCCaaaacucucCCACc -3' miRNA: 3'- -UCUGAGAUAGGACG--------UGGGAGGa--------GGUG- -5' |
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27024 | 3' | -55.9 | NC_005832.1 | + | 85560 | 0.66 | 0.816884 |
Target: 5'- uGAC-CUGcucUCCUGUAgCCUCgUCCAg -3' miRNA: 3'- uCUGaGAU---AGGACGUgGGAGgAGGUg -5' |
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27024 | 3' | -55.9 | NC_005832.1 | + | 1296 | 0.67 | 0.789252 |
Target: 5'- uGGugUCUGagacUCCaGCGucCCCUCCccagCCACa -3' miRNA: 3'- -UCugAGAU----AGGaCGU--GGGAGGa---GGUG- -5' |
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27024 | 3' | -55.9 | NC_005832.1 | + | 78595 | 0.67 | 0.78641 |
Target: 5'- uGGACUCUGcggcgcccaccggcUCgUGC-CCCUacaUCUCCGCu -3' miRNA: 3'- -UCUGAGAU--------------AGgACGuGGGA---GGAGGUG- -5' |
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27024 | 3' | -55.9 | NC_005832.1 | + | 83339 | 0.67 | 0.779725 |
Target: 5'- -aACUCUGUUCUGUACUCgacgUCgUCCAUg -3' miRNA: 3'- ucUGAGAUAGGACGUGGG----AGgAGGUG- -5' |
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27024 | 3' | -55.9 | NC_005832.1 | + | 10461 | 0.67 | 0.779725 |
Target: 5'- uAGuCUC---CCUGCcggugGCUCUCCUCCACc -3' miRNA: 3'- -UCuGAGauaGGACG-----UGGGAGGAGGUG- -5' |
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27024 | 3' | -55.9 | NC_005832.1 | + | 54101 | 0.67 | 0.770057 |
Target: 5'- cGGACUCUAgggucuuuacaUCCgGCGCuCCcCCUCC-Cg -3' miRNA: 3'- -UCUGAGAU-----------AGGaCGUG-GGaGGAGGuG- -5' |
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27024 | 3' | -55.9 | NC_005832.1 | + | 20991 | 0.67 | 0.750335 |
Target: 5'- uGGCUCUGUCCUccaggaucccaGCuCCCgccggCCUCCu- -3' miRNA: 3'- uCUGAGAUAGGA-----------CGuGGGa----GGAGGug -5' |
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27024 | 3' | -55.9 | NC_005832.1 | + | 63046 | 0.69 | 0.657246 |
Target: 5'- uAGAUUCUAucuUCCUGggggccaaACCCUCCaUCCAg -3' miRNA: 3'- -UCUGAGAU---AGGACg-------UGGGAGG-AGGUg -5' |
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27024 | 3' | -55.9 | NC_005832.1 | + | 100615 | 0.69 | 0.636072 |
Target: 5'- uGGACUCUAcUCCgGC-CUCUCCcauagCCGCa -3' miRNA: 3'- -UCUGAGAU-AGGaCGuGGGAGGa----GGUG- -5' |
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27024 | 3' | -55.9 | NC_005832.1 | + | 26937 | 0.69 | 0.625476 |
Target: 5'- uGcCUCUGcaagCgUGCACCCUCCUgcucCCGCa -3' miRNA: 3'- uCuGAGAUa---GgACGUGGGAGGA----GGUG- -5' |
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27024 | 3' | -55.9 | NC_005832.1 | + | 16791 | 0.7 | 0.572741 |
Target: 5'- uGGACUggGgcggCCUGCACCUg-CUCCACg -3' miRNA: 3'- -UCUGAgaUa---GGACGUGGGagGAGGUG- -5' |
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27024 | 3' | -55.9 | NC_005832.1 | + | 83221 | 0.73 | 0.430653 |
Target: 5'- cGACUCUAUCCcguuauagaaccucUGCACCggguCUCCcUCCAUa -3' miRNA: 3'- uCUGAGAUAGG--------------ACGUGG----GAGG-AGGUG- -5' |
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27024 | 3' | -55.9 | NC_005832.1 | + | 44979 | 0.69 | 0.64031 |
Target: 5'- gGGACUCUgagaccccgugagagAUUUUGCACCaCUgCUCCAUc -3' miRNA: 3'- -UCUGAGA---------------UAGGACGUGG-GAgGAGGUG- -5' |
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27024 | 3' | -55.9 | NC_005832.1 | + | 53609 | 0.69 | 0.625476 |
Target: 5'- cGAUgUCUGUCCUGUACggCCUCCuggUCUACa -3' miRNA: 3'- uCUG-AGAUAGGACGUG--GGAGG---AGGUG- -5' |
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27024 | 3' | -55.9 | NC_005832.1 | + | 20328 | 0.7 | 0.583228 |
Target: 5'- uGGACa--GUCCgGgGCCCUUCUCCGCa -3' miRNA: 3'- -UCUGagaUAGGaCgUGGGAGGAGGUG- -5' |
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27024 | 3' | -55.9 | NC_005832.1 | + | 92534 | 0.71 | 0.551909 |
Target: 5'- cGGCUCUGg---GCugCCUCCUCCucGCg -3' miRNA: 3'- uCUGAGAUaggaCGugGGAGGAGG--UG- -5' |
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27024 | 3' | -55.9 | NC_005832.1 | + | 43519 | 0.71 | 0.511001 |
Target: 5'- --cCUCUggGUCCaGCACCCUCCU-CACg -3' miRNA: 3'- ucuGAGA--UAGGaCGUGGGAGGAgGUG- -5' |
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27024 | 3' | -55.9 | NC_005832.1 | + | 2802 | 0.74 | 0.397291 |
Target: 5'- uAGACaggGUCCUcGCcauaguccacagGCCCUCCUCCGCg -3' miRNA: 3'- -UCUGagaUAGGA-CG------------UGGGAGGAGGUG- -5' |
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27024 | 3' | -55.9 | NC_005832.1 | + | 13431 | 0.66 | 0.842899 |
Target: 5'- aAGACcaUCg--CCguggacgGCACCUUCCUCCuGCa -3' miRNA: 3'- -UCUG--AGauaGGa------CGUGGGAGGAGG-UG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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