Results 21 - 29 of 29 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 27024 | 3' | -55.9 | NC_005832.1 | + | 53609 | 0.69 | 0.625476 |
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Target: 5'- cGAUgUCUGUCCUGUACggCCUCCuggUCUACa -3' miRNA: 3'- uCUG-AGAUAGGACGUG--GGAGG---AGGUG- -5' |
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| 27024 | 3' | -55.9 | NC_005832.1 | + | 20328 | 0.7 | 0.583228 |
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Target: 5'- uGGACa--GUCCgGgGCCCUUCUCCGCa -3' miRNA: 3'- -UCUGagaUAGGaCgUGGGAGGAGGUG- -5' |
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| 27024 | 3' | -55.9 | NC_005832.1 | + | 16791 | 0.7 | 0.572741 |
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Target: 5'- uGGACUggGgcggCCUGCACCUg-CUCCACg -3' miRNA: 3'- -UCUGAgaUa---GGACGUGGGagGAGGUG- -5' |
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| 27024 | 3' | -55.9 | NC_005832.1 | + | 92534 | 0.71 | 0.551909 |
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Target: 5'- cGGCUCUGg---GCugCCUCCUCCucGCg -3' miRNA: 3'- uCUGAGAUaggaCGugGGAGGAGG--UG- -5' |
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| 27024 | 3' | -55.9 | NC_005832.1 | + | 43519 | 0.71 | 0.511001 |
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Target: 5'- --cCUCUggGUCCaGCACCCUCCU-CACg -3' miRNA: 3'- ucuGAGA--UAGGaCGUGGGAGGAgGUG- -5' |
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| 27024 | 3' | -55.9 | NC_005832.1 | + | 83221 | 0.73 | 0.430653 |
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Target: 5'- cGACUCUAUCCcguuauagaaccucUGCACCggguCUCCcUCCAUa -3' miRNA: 3'- uCUGAGAUAGG--------------ACGUGG----GAGG-AGGUG- -5' |
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| 27024 | 3' | -55.9 | NC_005832.1 | + | 2802 | 0.74 | 0.397291 |
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Target: 5'- uAGACaggGUCCUcGCcauaguccacagGCCCUCCUCCGCg -3' miRNA: 3'- -UCUGagaUAGGA-CG------------UGGGAGGAGGUG- -5' |
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| 27024 | 3' | -55.9 | NC_005832.1 | + | 91987 | 0.78 | 0.20755 |
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Target: 5'- cGGACUCUAUCCUGUcugccaccGCCCUCCaaaacucucCCACc -3' miRNA: 3'- -UCUGAGAUAGGACG--------UGGGAGGa--------GGUG- -5' |
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| 27024 | 3' | -55.9 | NC_005832.1 | + | 6359 | 1.1 | 0.001419 |
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Target: 5'- cAGACUCUAUCCUGCACCCUCCUCCACa -3' miRNA: 3'- -UCUGAGAUAGGACGUGGGAGGAGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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