miRNA display CGI

Results 1 - 8 of 8 are showing below:
Show page: 1

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
27025	3'	-56.2	NC_005832.1	+	67889	0.66	0.852687
	Target:  5'- cCUcUCUCCUgaCGGGCCUaggcucggaCUCUGUCc-- -3' miRNA:   3'- -GGcAGAGGA--GCCCGGA---------GAGACAGuuc -5'
27025	3'	-56.2	NC_005832.1	+	64236	0.66	0.852687
	Target:  5'- aCGacagCCUCGGcCCgaccggCUCUGUCAAGg -3' miRNA:   3'- gGCaga-GGAGCCcGGa-----GAGACAGUUC- -5'
27025	3'	-56.2	NC_005832.1	+	32566	0.66	0.836385
	Target:  5'- aCUGcCUCCUCGcGGCCUCUggagcgGUCc-- -3' miRNA:   3'- -GGCaGAGGAGC-CCGGAGAga----CAGuuc -5'
27025	3'	-56.2	NC_005832.1	+	80004	0.67	0.783172
	Target:  5'- gCCGcccUCUCCUC-GGCCUgcucCUCggcaGUCAGGg -3' miRNA:   3'- -GGC---AGAGGAGcCCGGA----GAGa---CAGUUC- -5'
27025	3'	-56.2	NC_005832.1	+	28075	0.68	0.734929
	Target:  5'- gCCGUCUCCggCGGGaCC-CUUUGcCAc- -3' miRNA:   3'- -GGCAGAGGa-GCCC-GGaGAGACaGUuc -5'
27025	3'	-56.2	NC_005832.1	+	102363	0.7	0.643111
	Target:  5'- uCUGUCUCCUCuucGGCCUCgg-GUCGc- -3' miRNA:   3'- -GGCAGAGGAGc--CCGGAGagaCAGUuc -5'
27025	3'	-56.2	NC_005832.1	+	39997	0.7	0.62238
	Target:  5'- gUCGUCUCCcuUUGGGCC-CUCUGg---- -3' miRNA:   3'- -GGCAGAGG--AGCCCGGaGAGACaguuc -5'
27025	3'	-56.2	NC_005832.1	+	6551	0.97	0.014116
	Target:  5'- aCCGUCUCCUCGGGCCUCU-UGUCAAGc -3' miRNA:   3'- -GGCAGAGGAGCCCGGAGAgACAGUUC- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home