miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27026 5' -57.2 NC_005832.1 + 44690 0.66 0.779192
Target:  5'- cUCCCUCUcgaAGGC--GGUGG-CgUCGUAg -3'
miRNA:   3'- -AGGGAGG---UCCGuuUCACCaGgAGCGU- -5'
27026 5' -57.2 NC_005832.1 + 40343 0.66 0.76674
Target:  5'- cUCCCUauuugCGGGCGccauagcccggcagGAcGUGGUUCUCGCc -3'
miRNA:   3'- -AGGGAg----GUCCGU--------------UU-CACCAGGAGCGu -5'
27026 5' -57.2 NC_005832.1 + 37253 0.66 0.759946
Target:  5'- cUCCCacUCCcgaGGGCAu-GUGGUCCcUGCu -3'
miRNA:   3'- -AGGG--AGG---UCCGUuuCACCAGGaGCGu -5'
27026 5' -57.2 NC_005832.1 + 52244 0.67 0.698654
Target:  5'- aCCCUCCuccccuggAGGCGAcgcugucugggauAGUGGccUCCaUCGCGu -3'
miRNA:   3'- aGGGAGG--------UCCGUU-------------UCACC--AGG-AGCGU- -5'
27026 5' -57.2 NC_005832.1 + 5628 0.68 0.658186
Target:  5'- cUCCC-CUGGGCAGGGUGaccagacCCUCGUAc -3'
miRNA:   3'- -AGGGaGGUCCGUUUCACca-----GGAGCGU- -5'
27026 5' -57.2 NC_005832.1 + 1736 0.68 0.647734
Target:  5'- -aCgUCCgAGGCGuaccuccuGUGGUCCUCGUg -3'
miRNA:   3'- agGgAGG-UCCGUuu------CACCAGGAGCGu -5'
27026 5' -57.2 NC_005832.1 + 52371 0.68 0.647734
Target:  5'- gUCgCCUCCAGGgGAGGagGGUCgUgGCu -3'
miRNA:   3'- -AG-GGAGGUCCgUUUCa-CCAGgAgCGu -5'
27026 5' -57.2 NC_005832.1 + 91549 0.7 0.533702
Target:  5'- aUCUUCCAGGCAAAG-GGUUCgUCGg- -3'
miRNA:   3'- aGGGAGGUCCGUUUCaCCAGG-AGCgu -5'
27026 5' -57.2 NC_005832.1 + 54876 0.7 0.533702
Target:  5'- gUCCgccgCCAGGCAcAGgccGGUCCucUCGCAg -3'
miRNA:   3'- aGGGa---GGUCCGUuUCa--CCAGG--AGCGU- -5'
27026 5' -57.2 NC_005832.1 + 49457 0.72 0.445973
Target:  5'- cUCCCUCaGGGCucguuGUGGUCCcagUCGUAg -3'
miRNA:   3'- -AGGGAGgUCCGuuu--CACCAGG---AGCGU- -5'
27026 5' -57.2 NC_005832.1 + 7065 0.74 0.319791
Target:  5'- gUCCCUCacugugccgucgUAGGCAGAGaccaGGUCCUCGUu -3'
miRNA:   3'- -AGGGAG------------GUCCGUUUCa---CCAGGAGCGu -5'
27026 5' -57.2 NC_005832.1 + 43202 0.75 0.284121
Target:  5'- cUCCCgCCAGGCuggcGUGGUCCggCGCu -3'
miRNA:   3'- -AGGGaGGUCCGuuu-CACCAGGa-GCGu -5'
27026 5' -57.2 NC_005832.1 + 80826 0.77 0.222336
Target:  5'- cCCCUCCAgGGCccugGAGGggacggGGUCCUCGUAg -3'
miRNA:   3'- aGGGAGGU-CCG----UUUCa-----CCAGGAGCGU- -5'
27026 5' -57.2 NC_005832.1 + 7377 1.08 0.001498
Target:  5'- cUCCCUCCAGGCAAAGUGGUCCUCGCAc -3'
miRNA:   3'- -AGGGAGGUCCGUUUCACCAGGAGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.