Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27027 | 3' | -53.5 | NC_005832.1 | + | 16707 | 0.69 | 0.830175 |
Target: 5'- -aGAGCGCCAGccuGGUGUACGAaaacaccacaaGGCUc -3' miRNA: 3'- cgUUUGCGGUU---CCACAUGCUg----------CCGGc -5' |
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27027 | 3' | -53.5 | NC_005832.1 | + | 20843 | 0.69 | 0.812493 |
Target: 5'- uGCcuuCGCCGAGGUGUAcucugacccCGACauGGUCGa -3' miRNA: 3'- -CGuuuGCGGUUCCACAU---------GCUG--CCGGC- -5' |
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27027 | 3' | -53.5 | NC_005832.1 | + | 41468 | 0.7 | 0.794112 |
Target: 5'- gGCAuuGCGUCGAGGcucacucagAUGACGGCCa -3' miRNA: 3'- -CGUu-UGCGGUUCCaca------UGCUGCCGGc -5' |
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27027 | 3' | -53.5 | NC_005832.1 | + | 58210 | 0.7 | 0.784683 |
Target: 5'- cCAAACGUUAGGGcGgcCGACGGUCu -3' miRNA: 3'- cGUUUGCGGUUCCaCauGCUGCCGGc -5' |
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27027 | 3' | -53.5 | NC_005832.1 | + | 86506 | 0.7 | 0.775107 |
Target: 5'- uGCAua-GCCGcu-UGUGCGGCGGCCa -3' miRNA: 3'- -CGUuugCGGUuccACAUGCUGCCGGc -5' |
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27027 | 3' | -53.5 | NC_005832.1 | + | 37556 | 0.7 | 0.765395 |
Target: 5'- aCAua-GCCGGGGUGgGCGA-GGCCGu -3' miRNA: 3'- cGUuugCGGUUCCACaUGCUgCCGGC- -5' |
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27027 | 3' | -53.5 | NC_005832.1 | + | 67008 | 0.7 | 0.764417 |
Target: 5'- cCAAACGUCccgcugcGAGGgcccugGCGGCGGCCGu -3' miRNA: 3'- cGUUUGCGG-------UUCCaca---UGCUGCCGGC- -5' |
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27027 | 3' | -53.5 | NC_005832.1 | + | 63003 | 0.71 | 0.749597 |
Target: 5'- cCAGugGUCAAGGaaaagugcaggguucUGUGCGACauGGCCa -3' miRNA: 3'- cGUUugCGGUUCC---------------ACAUGCUG--CCGGc -5' |
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27027 | 3' | -53.5 | NC_005832.1 | + | 31873 | 0.71 | 0.724364 |
Target: 5'- aGCAAgggaugcACGCCAGGGU----GAUGGCCGu -3' miRNA: 3'- -CGUU-------UGCGGUUCCAcaugCUGCCGGC- -5' |
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27027 | 3' | -53.5 | NC_005832.1 | + | 97633 | 0.72 | 0.684001 |
Target: 5'- aGCAGGCugGagAAGGUGUccGCGGCGGUCGa -3' miRNA: 3'- -CGUUUG--CggUUCCACA--UGCUGCCGGC- -5' |
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27027 | 3' | -53.5 | NC_005832.1 | + | 9942 | 0.74 | 0.578623 |
Target: 5'- cGCuguGgGCCGAGGUG-ACGACGGgCa -3' miRNA: 3'- -CGuu-UgCGGUUCCACaUGCUGCCgGc -5' |
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27027 | 3' | -53.5 | NC_005832.1 | + | 56292 | 0.75 | 0.496762 |
Target: 5'- --cGACGUCAAGG-GUACcACGGCCGu -3' miRNA: 3'- cguUUGCGGUUCCaCAUGcUGCCGGC- -5' |
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27027 | 3' | -53.5 | NC_005832.1 | + | 70953 | 0.76 | 0.438933 |
Target: 5'- cGCGGACGUCAGGGUGUuugagaGgGACGaGCCc -3' miRNA: 3'- -CGUUUGCGGUUCCACA------UgCUGC-CGGc -5' |
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27027 | 3' | -53.5 | NC_005832.1 | + | 50425 | 0.78 | 0.368209 |
Target: 5'- gGCuuGCGUCAAGGUGUgcagggacACGGCGGCa- -3' miRNA: 3'- -CGuuUGCGGUUCCACA--------UGCUGCCGgc -5' |
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27027 | 3' | -53.5 | NC_005832.1 | + | 9504 | 1.11 | 0.00275 |
Target: 5'- aGCAAACGCCAAGGUGUACGACGGCCGu -3' miRNA: 3'- -CGUUUGCGGUUCCACAUGCUGCCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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