Results 61 - 67 of 67 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 27028 | 5' | -56.5 | NC_005832.1 | + | 74455 | 0.66 | 0.843332 |
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Target: 5'- cCUGACGGg-----CCUgGACGCCGUCa -3' miRNA: 3'- -GGCUGCCguucugGGAgUUGCGGCAG- -5' |
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| 27028 | 5' | -56.5 | NC_005832.1 | + | 9102 | 0.66 | 0.843332 |
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Target: 5'- gCGugGGguauaAAGuCCCUCc-UGCCGUCa -3' miRNA: 3'- gGCugCCg----UUCuGGGAGuuGCGGCAG- -5' |
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| 27028 | 5' | -56.5 | NC_005832.1 | + | 72796 | 0.66 | 0.843332 |
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Target: 5'- -gGACcaaCGGGACCCUUuGgGCCGUCg -3' miRNA: 3'- ggCUGcc-GUUCUGGGAGuUgCGGCAG- -5' |
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| 27028 | 5' | -56.5 | NC_005832.1 | + | 78577 | 0.66 | 0.851388 |
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Target: 5'- -gGACGGCGuacgagauuguGGACUCUgCGGCGCCc-- -3' miRNA: 3'- ggCUGCCGU-----------UCUGGGA-GUUGCGGcag -5' |
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| 27028 | 5' | -56.5 | NC_005832.1 | + | 86521 | 0.66 | 0.851388 |
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Target: 5'- gCGGCGGcCAAGaacgaaGCCUUgGGCGCCuUCu -3' miRNA: 3'- gGCUGCC-GUUC------UGGGAgUUGCGGcAG- -5' |
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| 27028 | 5' | -56.5 | NC_005832.1 | + | 9619 | 0.66 | 0.851388 |
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Target: 5'- cCUGG-GGCAGGcuguCCCUCAG-GUCGUCu -3' miRNA: 3'- -GGCUgCCGUUCu---GGGAGUUgCGGCAG- -5' |
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| 27028 | 5' | -56.5 | NC_005832.1 | + | 43351 | 0.66 | 0.859242 |
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Target: 5'- -aGAC-GC-GGACCCcgCAGCGCCGg- -3' miRNA: 3'- ggCUGcCGuUCUGGGa-GUUGCGGCag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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