Results 41 - 60 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27028 | 5' | -56.5 | NC_005832.1 | + | 33155 | 0.67 | 0.791166 |
Target: 5'- gCCGAcaCGGUGugguGACCUccUAugGCCGUCg -3' miRNA: 3'- -GGCU--GCCGUu---CUGGGa-GUugCGGCAG- -5' |
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27028 | 5' | -56.5 | NC_005832.1 | + | 32316 | 0.67 | 0.800276 |
Target: 5'- uUGugGGCuccGGACCC-CA-UGCCGUg -3' miRNA: 3'- gGCugCCGu--UCUGGGaGUuGCGGCAg -5' |
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27028 | 5' | -56.5 | NC_005832.1 | + | 29243 | 0.67 | 0.800276 |
Target: 5'- ----aGGCucacGACCgagCUCAACGCCGUCc -3' miRNA: 3'- ggcugCCGuu--CUGG---GAGUUGCGGCAG- -5' |
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27028 | 5' | -56.5 | NC_005832.1 | + | 28075 | 0.74 | 0.406915 |
Target: 5'- gCCGucucCGGCGGGACCCUuugccaccuugacCAccGCGUCGUCg -3' miRNA: 3'- -GGCu---GCCGUUCUGGGA-------------GU--UGCGGCAG- -5' |
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27028 | 5' | -56.5 | NC_005832.1 | + | 20809 | 0.71 | 0.570191 |
Target: 5'- cCCGAUccggaaGGCAGGGCCCUCAccaGgGCgGUa -3' miRNA: 3'- -GGCUG------CCGUUCUGGGAGU---UgCGgCAg -5' |
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27028 | 5' | -56.5 | NC_005832.1 | + | 20494 | 0.66 | 0.818023 |
Target: 5'- -gGACGGU---GCCCUUGAUGCUGUa -3' miRNA: 3'- ggCUGCCGuucUGGGAGUUGCGGCAg -5' |
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27028 | 5' | -56.5 | NC_005832.1 | + | 19836 | 0.69 | 0.656664 |
Target: 5'- cCUGACGGUcuuggccgguuucggAGGACCCgCcGCGCCGg- -3' miRNA: 3'- -GGCUGCCG---------------UUCUGGGaGuUGCGGCag -5' |
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27028 | 5' | -56.5 | NC_005832.1 | + | 19707 | 0.69 | 0.683368 |
Target: 5'- uCCGAaacCGGcCAAGACCgUCAGgGggaCCGUCa -3' miRNA: 3'- -GGCU---GCC-GUUCUGGgAGUUgC---GGCAG- -5' |
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27028 | 5' | -56.5 | NC_005832.1 | + | 13440 | 0.67 | 0.772517 |
Target: 5'- aUGGcCGGCAAGACCau---CGCCGUg -3' miRNA: 3'- gGCU-GCCGUUCUGGgaguuGCGGCAg -5' |
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27028 | 5' | -56.5 | NC_005832.1 | + | 12895 | 0.7 | 0.621561 |
Target: 5'- cCUGGCGuGCGGGGCCCUgcACGgCGUg -3' miRNA: 3'- -GGCUGC-CGUUCUGGGAguUGCgGCAg -5' |
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27028 | 5' | -56.5 | NC_005832.1 | + | 12848 | 0.69 | 0.673123 |
Target: 5'- uCC-ACGGCGAaACCCUCAcUGCCauGUCa -3' miRNA: 3'- -GGcUGCCGUUcUGGGAGUuGCGG--CAG- -5' |
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27028 | 5' | -56.5 | NC_005832.1 | + | 12068 | 0.67 | 0.809231 |
Target: 5'- gCCGGCGGCAaacgcagaaGGAUCggUCAcguAgGCCGUCu -3' miRNA: 3'- -GGCUGCCGU---------UCUGGg-AGU---UgCGGCAG- -5' |
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27028 | 5' | -56.5 | NC_005832.1 | + | 12011 | 0.66 | 0.835081 |
Target: 5'- -aGACGGa---GCCCUCAcCGCCGa- -3' miRNA: 3'- ggCUGCCguucUGGGAGUuGCGGCag -5' |
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27028 | 5' | -56.5 | NC_005832.1 | + | 11816 | 0.68 | 0.733762 |
Target: 5'- cCUGGCucuGGCcGGGCuCCUCGugauggcCGCCGUCg -3' miRNA: 3'- -GGCUG---CCGuUCUG-GGAGUu------GCGGCAG- -5' |
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27028 | 5' | -56.5 | NC_005832.1 | + | 10191 | 0.67 | 0.809231 |
Target: 5'- -aGGCGGUggagAGGAUCCUCAugacuucCGCCGcCg -3' miRNA: 3'- ggCUGCCG----UUCUGGGAGUu------GCGGCaG- -5' |
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27028 | 5' | -56.5 | NC_005832.1 | + | 9619 | 0.66 | 0.851388 |
Target: 5'- cCUGG-GGCAGGcuguCCCUCAG-GUCGUCu -3' miRNA: 3'- -GGCUgCCGUUCu---GGGAGUUgCGGCAG- -5' |
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27028 | 5' | -56.5 | NC_005832.1 | + | 9613 | 1.12 | 0.001286 |
Target: 5'- gCCGACGGCAAGACCCUCAACGCCGUCa -3' miRNA: 3'- -GGCUGCCGUUCUGGGAGUUGCGGCAG- -5' |
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27028 | 5' | -56.5 | NC_005832.1 | + | 9102 | 0.66 | 0.843332 |
Target: 5'- gCGugGGguauaAAGuCCCUCc-UGCCGUCa -3' miRNA: 3'- gGCugCCg----UUCuGGGAGuuGCGGCAG- -5' |
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27028 | 5' | -56.5 | NC_005832.1 | + | 7535 | 0.74 | 0.399132 |
Target: 5'- cCCGAgGGCAcGGACCC-CG-CGUCGUCc -3' miRNA: 3'- -GGCUgCCGU-UCUGGGaGUuGCGGCAG- -5' |
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27028 | 5' | -56.5 | NC_005832.1 | + | 7074 | 0.67 | 0.791166 |
Target: 5'- cCCcAUGGCGu--CCCUCAcugUGCCGUCg -3' miRNA: 3'- -GGcUGCCGUucuGGGAGUu--GCGGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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