miRNA display CGI


Results 41 - 60 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27028 5' -56.5 NC_005832.1 + 12848 0.69 0.673123
Target:  5'- uCC-ACGGCGAaACCCUCAcUGCCauGUCa -3'
miRNA:   3'- -GGcUGCCGUUcUGGGAGUuGCGG--CAG- -5'
27028 5' -56.5 NC_005832.1 + 33475 0.69 0.673123
Target:  5'- cCCG-CGGC--GACCCUCAggggacucgACGCCaagGUCa -3'
miRNA:   3'- -GGCuGCCGuuCUGGGAGU---------UGCGG---CAG- -5'
27028 5' -56.5 NC_005832.1 + 6988 0.69 0.673123
Target:  5'- aCGGCGGgCAcggcauGGACCCUCAGaggUGCUGgUCg -3'
miRNA:   3'- gGCUGCC-GU------UCUGGGAGUU---GCGGC-AG- -5'
27028 5' -56.5 NC_005832.1 + 53042 0.69 0.662844
Target:  5'- gUCGcCGGCAGGAUCCUgAGgGCCa-- -3'
miRNA:   3'- -GGCuGCCGUUCUGGGAgUUgCGGcag -5'
27028 5' -56.5 NC_005832.1 + 19836 0.69 0.656664
Target:  5'- cCUGACGGUcuuggccgguuucggAGGACCCgCcGCGCCGg- -3'
miRNA:   3'- -GGCUGCCG---------------UUCUGGGaGuUGCGGCag -5'
27028 5' -56.5 NC_005832.1 + 97069 0.69 0.65254
Target:  5'- cUCGGaGGCAAGGCCCagGAgGCCcuGUCg -3'
miRNA:   3'- -GGCUgCCGUUCUGGGagUUgCGG--CAG- -5'
27028 5' -56.5 NC_005832.1 + 49188 0.7 0.639121
Target:  5'- cCCGACguGGCGuuugcGGaaaugucuauagacGCCUUCAACGCCGUg -3'
miRNA:   3'- -GGCUG--CCGU-----UC--------------UGGGAGUUGCGGCAg -5'
27028 5' -56.5 NC_005832.1 + 44535 0.7 0.63189
Target:  5'- gCGGCgugcaagcugGGCAAGACCUaCGACGCCa-- -3'
miRNA:   3'- gGCUG----------CCGUUCUGGGaGUUGCGGcag -5'
27028 5' -56.5 NC_005832.1 + 12895 0.7 0.621561
Target:  5'- cCUGGCGuGCGGGGCCCUgcACGgCGUg -3'
miRNA:   3'- -GGCUGC-CGUUCUGGGAguUGCgGCAg -5'
27028 5' -56.5 NC_005832.1 + 54811 0.7 0.600936
Target:  5'- gCCGACGGgGGGACCgUCcugGACcCCGUg -3'
miRNA:   3'- -GGCUGCCgUUCUGGgAG---UUGcGGCAg -5'
27028 5' -56.5 NC_005832.1 + 72745 0.7 0.600936
Target:  5'- gCGACucCAuucGGACCCUUcACGCCGUCc -3'
miRNA:   3'- gGCUGccGU---UCUGGGAGuUGCGGCAG- -5'
27028 5' -56.5 NC_005832.1 + 39499 0.71 0.574272
Target:  5'- gCCGAUcccucugcuccccugGGCcccuGGGCCCUgGuCGCCGUCg -3'
miRNA:   3'- -GGCUG---------------CCGu---UCUGGGAgUuGCGGCAG- -5'
27028 5' -56.5 NC_005832.1 + 20809 0.71 0.570191
Target:  5'- cCCGAUccggaaGGCAGGGCCCUCAccaGgGCgGUa -3'
miRNA:   3'- -GGCUG------CCGUUCUGGGAGU---UgCGgCAg -5'
27028 5' -56.5 NC_005832.1 + 56145 0.71 0.549906
Target:  5'- uCCGGgGGCAAGACCC--AGgGCCG-Cg -3'
miRNA:   3'- -GGCUgCCGUUCUGGGagUUgCGGCaG- -5'
27028 5' -56.5 NC_005832.1 + 41307 0.72 0.500291
Target:  5'- uCCGACaGGaGAGcguCCCUgAugGCCGUCa -3'
miRNA:   3'- -GGCUG-CCgUUCu--GGGAgUugCGGCAG- -5'
27028 5' -56.5 NC_005832.1 + 75182 0.72 0.490599
Target:  5'- aCGuAUGGUcgacGAGACCCUCGAUGgUGUCg -3'
miRNA:   3'- gGC-UGCCG----UUCUGGGAGUUGCgGCAG- -5'
27028 5' -56.5 NC_005832.1 + 65466 0.72 0.490599
Target:  5'- aCCGugGGCGagaggGGGCCCUC-ACGuccCCGUg -3'
miRNA:   3'- -GGCugCCGU-----UCUGGGAGuUGC---GGCAg -5'
27028 5' -56.5 NC_005832.1 + 93768 0.72 0.480995
Target:  5'- aCGGCGGCAaacccGGcucacACCCUCcACGCCGg- -3'
miRNA:   3'- gGCUGCCGU-----UC-----UGGGAGuUGCGGCag -5'
27028 5' -56.5 NC_005832.1 + 2276 0.73 0.443541
Target:  5'- cCCGGUGGCGuugcuGGCCgUCuccAACGCCGUCa -3'
miRNA:   3'- -GGCUGCCGUu----CUGGgAG---UUGCGGCAG- -5'
27028 5' -56.5 NC_005832.1 + 56160 0.74 0.407786
Target:  5'- uUGACGGCcguGGuACCCUUGACGUCGUa -3'
miRNA:   3'- gGCUGCCGu--UC-UGGGAGUUGCGGCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.