miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27030 3' -55.5 NC_005832.1 + 51039 0.66 0.87941
Target:  5'- aGGCAGGU-----GGGACCGacgggCAGGuGGg -3'
miRNA:   3'- -UCGUCCAaagacUCCUGGCa----GUCC-CC- -5'
27030 3' -55.5 NC_005832.1 + 19984 0.66 0.856603
Target:  5'- uGCAGGcggucCUGAGGAUCGcucccacCAGGGa -3'
miRNA:   3'- uCGUCCaaa--GACUCCUGGCa------GUCCCc -5'
27030 3' -55.5 NC_005832.1 + 86934 0.67 0.840325
Target:  5'- cGGUGGGg--UUGAGGAgcCCGUgAGGGu -3'
miRNA:   3'- -UCGUCCaaaGACUCCU--GGCAgUCCCc -5'
27030 3' -55.5 NC_005832.1 + 22750 0.67 0.840325
Target:  5'- uGCAuGGa----GAGGauaGCCGUCAGGGGu -3'
miRNA:   3'- uCGU-CCaaagaCUCC---UGGCAGUCCCC- -5'
27030 3' -55.5 NC_005832.1 + 19506 0.67 0.840325
Target:  5'- cAGCGGaGccgCagaGAGGGCCaUCAGGGGa -3'
miRNA:   3'- -UCGUC-CaaaGa--CUCCUGGcAGUCCCC- -5'
27030 3' -55.5 NC_005832.1 + 75113 0.67 0.823253
Target:  5'- uGGCGGGccaCUG-GGACgaCGUgAGGGGa -3'
miRNA:   3'- -UCGUCCaaaGACuCCUG--GCAgUCCCC- -5'
27030 3' -55.5 NC_005832.1 + 1472 0.67 0.796303
Target:  5'- uGUAGGggUUgccgUGAGGACCaagaGGGGGg -3'
miRNA:   3'- uCGUCCaaAG----ACUCCUGGcag-UCCCC- -5'
27030 3' -55.5 NC_005832.1 + 82855 0.68 0.767956
Target:  5'- uGCgAGGUugcguUUCUcaucGAGGACCGUCGGaGGc -3'
miRNA:   3'- uCG-UCCA-----AAGA----CUCCUGGCAGUC-CCc -5'
27030 3' -55.5 NC_005832.1 + 2662 0.69 0.68855
Target:  5'- gGGUGGGUguggaaggacacGAGG-CCGUCGGGGGc -3'
miRNA:   3'- -UCGUCCAaaga--------CUCCuGGCAGUCCCC- -5'
27030 3' -55.5 NC_005832.1 + 5676 0.7 0.635351
Target:  5'- cGguGG-UUCUGAGGAgCUGgaagaCGGGGGa -3'
miRNA:   3'- uCguCCaAAGACUCCU-GGCa----GUCCCC- -5'
27030 3' -55.5 NC_005832.1 + 54798 0.72 0.562417
Target:  5'- gGGCAGG---CUaAGGGCCGaCGGGGGg -3'
miRNA:   3'- -UCGUCCaaaGAcUCCUGGCaGUCCCC- -5'
27030 3' -55.5 NC_005832.1 + 19697 0.72 0.521694
Target:  5'- cGGCGGGUccUCcGAaaccggccaaGACCGUCAGGGGg -3'
miRNA:   3'- -UCGUCCAa-AGaCUc---------CUGGCAGUCCCC- -5'
27030 3' -55.5 NC_005832.1 + 79684 0.72 0.521694
Target:  5'- gAGCAGGUUggccCUGAGGcCCGgguaAGGGu -3'
miRNA:   3'- -UCGUCCAAa---GACUCCuGGCag--UCCCc -5'
27030 3' -55.5 NC_005832.1 + 29357 0.77 0.28954
Target:  5'- gGGUuugAGGacugUCUGAGGAUCaGUCAGGGGa -3'
miRNA:   3'- -UCG---UCCaa--AGACUCCUGG-CAGUCCCC- -5'
27030 3' -55.5 NC_005832.1 + 11203 1.11 0.00157
Target:  5'- cAGCAGGUUUCUGAGGACCGUCAGGGGg -3'
miRNA:   3'- -UCGUCCAAAGACUCCUGGCAGUCCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.