miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27031 3' -56.9 NC_005832.1 + 32262 0.66 0.792809
Target:  5'- gGAGGCCUUUaggGCCccGGAGCcaGUcGCCACg -3'
miRNA:   3'- -CUCUGGAAG---CGGu-UCUCG--CAcCGGUG- -5'
27031 3' -56.9 NC_005832.1 + 43196 0.66 0.792809
Target:  5'- aGGGCgCUccCGCCAGGcuGGCGUGGUCcgGCg -3'
miRNA:   3'- cUCUG-GAa-GCGGUUC--UCGCACCGG--UG- -5'
27031 3' -56.9 NC_005832.1 + 7518 0.66 0.784341
Target:  5'- aGGGACCUgguggggugcucguUCGUCAGGAGgGaccuccuggaccugcUGGCCGu -3'
miRNA:   3'- -CUCUGGA--------------AGCGGUUCUCgC---------------ACCGGUg -5'
27031 3' -56.9 NC_005832.1 + 36524 0.66 0.783392
Target:  5'- -cGGCgUaCGCCAGGGcCGggGGCCACa -3'
miRNA:   3'- cuCUGgAaGCGGUUCUcGCa-CCGGUG- -5'
27031 3' -56.9 NC_005832.1 + 44066 0.66 0.768031
Target:  5'- gGGGGCCcUCGUCAGGAGgGUagagggaaagagaaaGGCgGCc -3'
miRNA:   3'- -CUCUGGaAGCGGUUCUCgCA---------------CCGgUG- -5'
27031 3' -56.9 NC_005832.1 + 29915 0.66 0.764138
Target:  5'- aGAGGCCUggucuggggCGgCGGGGGCGgcgguggaGGCCAa -3'
miRNA:   3'- -CUCUGGAa--------GCgGUUCUCGCa-------CCGGUg -5'
27031 3' -56.9 NC_005832.1 + 91441 0.66 0.75432
Target:  5'- -cGGCCgucaUgGCCAAGcuGGaCGUGGCCAg -3'
miRNA:   3'- cuCUGGa---AgCGGUUC--UC-GCACCGGUg -5'
27031 3' -56.9 NC_005832.1 + 79144 0.67 0.73435
Target:  5'- uGAGGCCUaCGUCucccuGAGGGUGagGGCCAg -3'
miRNA:   3'- -CUCUGGAaGCGG-----UUCUCGCa-CCGGUg -5'
27031 3' -56.9 NC_005832.1 + 73020 0.67 0.703715
Target:  5'- aAGGCCccgacgCGCCAGGuAGCGUcGUCGCa -3'
miRNA:   3'- cUCUGGaa----GCGGUUC-UCGCAcCGGUG- -5'
27031 3' -56.9 NC_005832.1 + 90931 0.67 0.702683
Target:  5'- -cGACCUcaggagccucaucUCgGCCGAGGGCG-GGCCc- -3'
miRNA:   3'- cuCUGGA-------------AG-CGGUUCUCGCaCCGGug -5'
27031 3' -56.9 NC_005832.1 + 5098 0.67 0.693362
Target:  5'- cAGACCcaaCGCCAGGca-GUGGCCAg -3'
miRNA:   3'- cUCUGGaa-GCGGUUCucgCACCGGUg -5'
27031 3' -56.9 NC_005832.1 + 67065 0.68 0.672504
Target:  5'- aGAGGCCUgaccuggaCGCCGAG-GCccuggaGGCCACu -3'
miRNA:   3'- -CUCUGGAa-------GCGGUUCuCGca----CCGGUG- -5'
27031 3' -56.9 NC_005832.1 + 10033 0.68 0.672504
Target:  5'- ----gCUUCGUCGGGcGCGUcGGCCGCg -3'
miRNA:   3'- cucugGAAGCGGUUCuCGCA-CCGGUG- -5'
27031 3' -56.9 NC_005832.1 + 75388 0.69 0.615696
Target:  5'- uGGGACCUgguggacccaaaGUCGGGGGcCGUGGCuCACa -3'
miRNA:   3'- -CUCUGGAag----------CGGUUCUC-GCACCG-GUG- -5'
27031 3' -56.9 NC_005832.1 + 27568 0.71 0.467145
Target:  5'- cGAGGCCUUC-CUggGAGCGgugugcacGGCCGu -3'
miRNA:   3'- -CUCUGGAAGcGGuuCUCGCa-------CCGGUg -5'
27031 3' -56.9 NC_005832.1 + 47409 0.72 0.411461
Target:  5'- cGGGAuCCUUguugcUGcCCAGGAGCGUcccGGCCACa -3'
miRNA:   3'- -CUCU-GGAA-----GC-GGUUCUCGCA---CCGGUG- -5'
27031 3' -56.9 NC_005832.1 + 90151 0.73 0.351963
Target:  5'- uGAGGCgaaaaaUGCCAAGAGCuUGGCCACu -3'
miRNA:   3'- -CUCUGgaa---GCGGUUCUCGcACCGGUG- -5'
27031 3' -56.9 NC_005832.1 + 76410 0.74 0.320807
Target:  5'- aGGACCUgCGCCGGGAGgaccGGCCACa -3'
miRNA:   3'- cUCUGGAaGCGGUUCUCgca-CCGGUG- -5'
27031 3' -56.9 NC_005832.1 + 11341 1.08 0.001451
Target:  5'- cGAGACCUUCGCCAAGAGCGUGGCCACc -3'
miRNA:   3'- -CUCUGGAAGCGGUUCUCGCACCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.