miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27031 5' -57.2 NC_005832.1 + 10773 0.67 0.6986
Target:  5'- gCGGAGGCCAggaacccgagUCA-GGUUAGGaggAUGGCc -3'
miRNA:   3'- -GCCUCCGGU----------AGUaCCGGUCCa--UGCUG- -5'
27031 5' -57.2 NC_005832.1 + 51878 0.68 0.667629
Target:  5'- gGGAGGCCcugggUAUGGCuCAGG--CGGCc -3'
miRNA:   3'- gCCUCCGGua---GUACCG-GUCCauGCUG- -5'
27031 5' -57.2 NC_005832.1 + 75797 0.68 0.657234
Target:  5'- uGGGcGCCAUgGgcugGGCCAGGUACcuGCa -3'
miRNA:   3'- gCCUcCGGUAgUa---CCGGUCCAUGc-UG- -5'
27031 5' -57.2 NC_005832.1 + 53044 0.68 0.657234
Target:  5'- uGGucGCCggCAggauccugagGGCCAGGaGCGACg -3'
miRNA:   3'- gCCucCGGuaGUa---------CCGGUCCaUGCUG- -5'
27031 5' -57.2 NC_005832.1 + 21244 0.68 0.656193
Target:  5'- aGGAGGUCAgUCAggacGGCCGGGgcgucccUACGGg -3'
miRNA:   3'- gCCUCCGGU-AGUa---CCGGUCC-------AUGCUg -5'
27031 5' -57.2 NC_005832.1 + 9275 0.68 0.632216
Target:  5'- aGGAcccuGGUgcaCAUCGUGGCCAGGcucaugaagauugACGGCa -3'
miRNA:   3'- gCCU----CCG---GUAGUACCGGUCCa------------UGCUG- -5'
27031 5' -57.2 NC_005832.1 + 6586 0.69 0.611362
Target:  5'- aGGAuGGCCGUCAUGuCCAGGgcccaguccaaggGgGACa -3'
miRNA:   3'- gCCU-CCGGUAGUACcGGUCCa------------UgCUG- -5'
27031 5' -57.2 NC_005832.1 + 97558 0.69 0.605116
Target:  5'- aGGuGGCCAgcgcCGUGGUCAucUGCGACa -3'
miRNA:   3'- gCCuCCGGUa---GUACCGGUccAUGCUG- -5'
27031 5' -57.2 NC_005832.1 + 52705 0.69 0.5885
Target:  5'- aCGGAgugagGGCCGUggugguggacuugggCAUGGCCAGGaucccCGGCa -3'
miRNA:   3'- -GCCU-----CCGGUA---------------GUACCGGUCCau---GCUG- -5'
27031 5' -57.2 NC_005832.1 + 77374 0.69 0.584358
Target:  5'- gGGGGGacaUGUCA-GGUauCAGGUGCGACa -3'
miRNA:   3'- gCCUCCg--GUAGUaCCG--GUCCAUGCUG- -5'
27031 5' -57.2 NC_005832.1 + 1446 0.7 0.553507
Target:  5'- gGGGGGCCu--GUGGCUGGGgagGgGACg -3'
miRNA:   3'- gCCUCCGGuagUACCGGUCCa--UgCUG- -5'
27031 5' -57.2 NC_005832.1 + 39088 0.7 0.553507
Target:  5'- aGGAgGGCCGUCcgGGaccCCAGGUucACGGu -3'
miRNA:   3'- gCCU-CCGGUAGuaCC---GGUCCA--UGCUg -5'
27031 5' -57.2 NC_005832.1 + 41733 0.7 0.513182
Target:  5'- uGGAaugaguucccGGCCAUgGUGGCCAGGga-GAa -3'
miRNA:   3'- gCCU----------CCGGUAgUACCGGUCCaugCUg -5'
27031 5' -57.2 NC_005832.1 + 11520 0.72 0.445815
Target:  5'- -aGAGGCUgcauaGUCcUGGCCAGGggaGCGGCg -3'
miRNA:   3'- gcCUCCGG-----UAGuACCGGUCCa--UGCUG- -5'
27031 5' -57.2 NC_005832.1 + 89601 0.73 0.374447
Target:  5'- uGGAGGCCAcCAUGGCCuaccagaAGGagcACGAUc -3'
miRNA:   3'- gCCUCCGGUaGUACCGG-------UCCa--UGCUG- -5'
27031 5' -57.2 NC_005832.1 + 76819 0.73 0.367008
Target:  5'- gGGAGGCgucugaaaaCAUGGCCAGGUACa-- -3'
miRNA:   3'- gCCUCCGgua------GUACCGGUCCAUGcug -5'
27031 5' -57.2 NC_005832.1 + 11307 1.1 0.001185
Target:  5'- gCGGAGGCCAUCAUGGCCAGGUACGACa -3'
miRNA:   3'- -GCCUCCGGUAGUACCGGUCCAUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.