miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27032 5' -53.4 NC_005832.1 + 39245 0.66 0.926907
Target:  5'- -gCGGAGGCUcGGgaucGGGGACCgugaaCCUGg -3'
miRNA:   3'- ugGUCUUCGA-CCa---UCUCUGGaa---GGAC- -5'
27032 5' -53.4 NC_005832.1 + 42493 0.66 0.926907
Target:  5'- cGCCAuGcuCUGGUGGuGGACCgUCCUGc -3'
miRNA:   3'- -UGGUcUucGACCAUC-UCUGGaAGGAC- -5'
27032 5' -53.4 NC_005832.1 + 65713 0.66 0.926907
Target:  5'- aACCAGAGGCUG--AG-GGCCcUCCa- -3'
miRNA:   3'- -UGGUCUUCGACcaUCuCUGGaAGGac -5'
27032 5' -53.4 NC_005832.1 + 5048 0.67 0.888516
Target:  5'- cACCccaGGAGGCUGGUcaugaccaGGAuGCCggUCCUGc -3'
miRNA:   3'- -UGG---UCUUCGACCA--------UCUcUGGa-AGGAC- -5'
27032 5' -53.4 NC_005832.1 + 20698 0.67 0.881217
Target:  5'- gAUCGGGAGCaGaGUAcGAGGCCgcCCUGg -3'
miRNA:   3'- -UGGUCUUCGaC-CAU-CUCUGGaaGGAC- -5'
27032 5' -53.4 NC_005832.1 + 79425 0.68 0.849623
Target:  5'- cUgGGAGGCcugGGUGGAGcgGCCUcCCUGg -3'
miRNA:   3'- uGgUCUUCGa--CCAUCUC--UGGAaGGAC- -5'
27032 5' -53.4 NC_005832.1 + 81933 0.68 0.814532
Target:  5'- gACCAGAGaagGGUGGAGGugUUCCUGu -3'
miRNA:   3'- -UGGUCUUcgaCCAUCUCUggAAGGAC- -5'
27032 5' -53.4 NC_005832.1 + 71163 0.69 0.795845
Target:  5'- uUUAGggGCUGG-AGAGGCUcUCCg- -3'
miRNA:   3'- uGGUCuuCGACCaUCUCUGGaAGGac -5'
27032 5' -53.4 NC_005832.1 + 63079 0.69 0.76661
Target:  5'- uCCAGAuuaAGCUGGUGGAcGugUUUCUg- -3'
miRNA:   3'- uGGUCU---UCGACCAUCU-CugGAAGGac -5'
27032 5' -53.4 NC_005832.1 + 86437 0.69 0.76661
Target:  5'- cGCCugaGGAGGCUGGUguGGAG-CCUaaacagCCUGa -3'
miRNA:   3'- -UGG---UCUUCGACCA--UCUCuGGAa-----GGAC- -5'
27032 5' -53.4 NC_005832.1 + 96502 0.7 0.756584
Target:  5'- aGCCAGGGaccuggacucuGC-GGUAGAGGCCgugUCCUc -3'
miRNA:   3'- -UGGUCUU-----------CGaCCAUCUCUGGa--AGGAc -5'
27032 5' -53.4 NC_005832.1 + 101732 0.73 0.554831
Target:  5'- uGCCguugAGAAGCUGGUGGGGuccaagcCCUUCCc- -3'
miRNA:   3'- -UGG----UCUUCGACCAUCUCu------GGAAGGac -5'
27032 5' -53.4 NC_005832.1 + 92890 0.73 0.544295
Target:  5'- gGCCAGGAGUUGGUcguaggcucccAGGGACUUUaUCUGg -3'
miRNA:   3'- -UGGUCUUCGACCA-----------UCUCUGGAA-GGAC- -5'
27032 5' -53.4 NC_005832.1 + 65942 0.74 0.492727
Target:  5'- cGCCuuuAGGCUGGcUAGGGACCUgucCCUGg -3'
miRNA:   3'- -UGGuc-UUCGACC-AUCUCUGGAa--GGAC- -5'
27032 5' -53.4 NC_005832.1 + 11654 1.08 0.003554
Target:  5'- cACCAGAAGCUGGUAGAGACCUUCCUGu -3'
miRNA:   3'- -UGGUCUUCGACCAUCUCUGGAAGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.