miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27033 5' -50.8 NC_005832.1 + 42553 0.66 0.983525
Target:  5'- cUCCAaGGAGGACuacguuagGCaCAUCCugGCCGg -3'
miRNA:   3'- cAGGUaUCUCUUGua------UG-GUAGG--CGGC- -5'
27033 5' -50.8 NC_005832.1 + 27728 0.66 0.979145
Target:  5'- cGUCUAUGGAGuACucAUCGUCCacgGCCGu -3'
miRNA:   3'- -CAGGUAUCUCuUGuaUGGUAGG---CGGC- -5'
27033 5' -50.8 NC_005832.1 + 60727 0.66 0.979145
Target:  5'- -aCCAUGGGGGugAUAagauCCAUCCuCCu -3'
miRNA:   3'- caGGUAUCUCUugUAU----GGUAGGcGGc -5'
27033 5' -50.8 NC_005832.1 + 102206 0.66 0.979145
Target:  5'- cUCCAUGGcGGACGguguUACCGUCUccugaGCCa -3'
miRNA:   3'- cAGGUAUCuCUUGU----AUGGUAGG-----CGGc -5'
27033 5' -50.8 NC_005832.1 + 47475 0.66 0.973954
Target:  5'- aGUCCcucuugaugAUAGGGAGCAgguCCA-CUGCCa -3'
miRNA:   3'- -CAGG---------UAUCUCUUGUau-GGUaGGCGGc -5'
27033 5' -50.8 NC_005832.1 + 58609 0.67 0.971034
Target:  5'- -aCCAUGGAGGGCG-ACCAggagaugaCGCCc -3'
miRNA:   3'- caGGUAUCUCUUGUaUGGUag------GCGGc -5'
27033 5' -50.8 NC_005832.1 + 7135 0.67 0.969802
Target:  5'- cGUCCGaccagcaccucugAGGGucCAUGCCGUgcCCGCCGu -3'
miRNA:   3'- -CAGGUa------------UCUCuuGUAUGGUA--GGCGGC- -5'
27033 5' -50.8 NC_005832.1 + 98096 0.67 0.967885
Target:  5'- -gCUucgGGGGAACGUcuGCCGUCCcacGCCGa -3'
miRNA:   3'- caGGua-UCUCUUGUA--UGGUAGG---CGGC- -5'
27033 5' -50.8 NC_005832.1 + 42568 0.67 0.967557
Target:  5'- -gCCGUcaGGGACGUGCUuggccagAUCCGCCa -3'
miRNA:   3'- caGGUAucUCUUGUAUGG-------UAGGCGGc -5'
27033 5' -50.8 NC_005832.1 + 62289 0.67 0.957
Target:  5'- -cCCAUAGAGG----GCCAUCUGCuCGu -3'
miRNA:   3'- caGGUAUCUCUuguaUGGUAGGCG-GC- -5'
27033 5' -50.8 NC_005832.1 + 39455 0.68 0.948485
Target:  5'- cGUCCccggGGGGGGuCAUGCUAgacCCGCCa -3'
miRNA:   3'- -CAGGua--UCUCUU-GUAUGGUa--GGCGGc -5'
27033 5' -50.8 NC_005832.1 + 8454 0.68 0.947118
Target:  5'- cGUCagaGUAG-GAAUAguccacguacucucUGCCGUCCGCCu -3'
miRNA:   3'- -CAGg--UAUCuCUUGU--------------AUGGUAGGCGGc -5'
27033 5' -50.8 NC_005832.1 + 5742 0.69 0.916569
Target:  5'- -cCCAggGGAGAu----CCGUCCGCCGu -3'
miRNA:   3'- caGGUa-UCUCUuguauGGUAGGCGGC- -5'
27033 5' -50.8 NC_005832.1 + 87599 0.69 0.90378
Target:  5'- cGUCCAUccuGGAGAcgaggugggagACGUcgGCCuuugCCGCCGg -3'
miRNA:   3'- -CAGGUA---UCUCU-----------UGUA--UGGua--GGCGGC- -5'
27033 5' -50.8 NC_005832.1 + 43670 0.69 0.90378
Target:  5'- aGUCCAacaUGGGGaAGCAgGCCAUaggcuuccCCGCCGu -3'
miRNA:   3'- -CAGGU---AUCUC-UUGUaUGGUA--------GGCGGC- -5'
27033 5' -50.8 NC_005832.1 + 2134 0.71 0.859217
Target:  5'- aGUCCGaGGGGGACAgggccacgACCAUgaCGCCGu -3'
miRNA:   3'- -CAGGUaUCUCUUGUa-------UGGUAg-GCGGC- -5'
27033 5' -50.8 NC_005832.1 + 24702 0.72 0.806373
Target:  5'- -gCCAUGGAGAucaucGCAUACC-UCCaGCCc -3'
miRNA:   3'- caGGUAUCUCU-----UGUAUGGuAGG-CGGc -5'
27033 5' -50.8 NC_005832.1 + 93505 0.72 0.806373
Target:  5'- -cCCAUAGuagcugGGAGCGUugUGUCUGCCGc -3'
miRNA:   3'- caGGUAUC------UCUUGUAugGUAGGCGGC- -5'
27033 5' -50.8 NC_005832.1 + 9731 0.73 0.766454
Target:  5'- -aCCGUAGGGAGCAgacagcuccagccUGCCucccUCCGCCc -3'
miRNA:   3'- caGGUAUCUCUUGU-------------AUGGu---AGGCGGc -5'
27033 5' -50.8 NC_005832.1 + 93659 0.74 0.68381
Target:  5'- -gCCGUAGAGA----ACCAUCCGUCGu -3'
miRNA:   3'- caGGUAUCUCUuguaUGGUAGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.