Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27034 | 5' | -57.5 | NC_005832.1 | + | 53913 | 0.75 | 0.253469 |
Target: 5'- aGGGGUCCugAAGGAGGCCUggGGCCa-- -3' miRNA: 3'- -UUUCAGG--UUCCUCCGGGagCCGGaau -5' |
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27034 | 5' | -57.5 | NC_005832.1 | + | 94195 | 0.66 | 0.721102 |
Target: 5'- gAAAG-CCGggcuGGGAGGCCCUCuuuccGCCa-- -3' miRNA: 3'- -UUUCaGGU----UCCUCCGGGAGc----CGGaau -5' |
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27034 | 5' | -57.5 | NC_005832.1 | + | 38715 | 0.66 | 0.721102 |
Target: 5'- cGGAGcUCGAGGAGGCUUUCguagaccuGGCCUUc -3' miRNA: 3'- -UUUCaGGUUCCUCCGGGAG--------CCGGAAu -5' |
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27034 | 5' | -57.5 | NC_005832.1 | + | 96365 | 0.66 | 0.721102 |
Target: 5'- ---cUCCGAGGAGagcucagcGCCCugUCGGCCg-- -3' miRNA: 3'- uuucAGGUUCCUC--------CGGG--AGCCGGaau -5' |
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27034 | 5' | -57.5 | NC_005832.1 | + | 28064 | 0.66 | 0.707652 |
Target: 5'- --uGUCCAGGGugguggggaccaagAGGCCCUUuGCCg-- -3' miRNA: 3'- uuuCAGGUUCC--------------UCCGGGAGcCGGaau -5' |
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27034 | 5' | -57.5 | NC_005832.1 | + | 12992 | 0.66 | 0.70036 |
Target: 5'- cGGGGUCCGucAGGcugggguccAGGCCCcUGGUCUUGa -3' miRNA: 3'- -UUUCAGGU--UCC---------UCCGGGaGCCGGAAU- -5' |
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27034 | 5' | -57.5 | NC_005832.1 | + | 48296 | 0.67 | 0.658214 |
Target: 5'- uAAAGUCCugcaGGGCCCUggucaCGGCCUg- -3' miRNA: 3'- -UUUCAGGuuccUCCGGGA-----GCCGGAau -5' |
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27034 | 5' | -57.5 | NC_005832.1 | + | 43130 | 0.67 | 0.647597 |
Target: 5'- uGGAGacacCCAGGGAGGCCgUgcUGGCCa-- -3' miRNA: 3'- -UUUCa---GGUUCCUCCGGgA--GCCGGaau -5' |
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27034 | 5' | -57.5 | NC_005832.1 | + | 79289 | 0.68 | 0.594491 |
Target: 5'- ----gCCAGGGAGGCCgCUCcacccaGGCCUc- -3' miRNA: 3'- uuucaGGUUCCUCCGG-GAG------CCGGAau -5' |
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27034 | 5' | -57.5 | NC_005832.1 | + | 16980 | 0.7 | 0.481463 |
Target: 5'- gGAGGUCCu-GGAuGGCCCUCaGCUUg- -3' miRNA: 3'- -UUUCAGGuuCCU-CCGGGAGcCGGAau -5' |
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27034 | 5' | -57.5 | NC_005832.1 | + | 90776 | 0.7 | 0.461974 |
Target: 5'- aGGAGccUCCuGAGGGGcccGCCCUCGGCCg-- -3' miRNA: 3'- -UUUC--AGG-UUCCUC---CGGGAGCCGGaau -5' |
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27034 | 5' | -57.5 | NC_005832.1 | + | 90387 | 0.7 | 0.442909 |
Target: 5'- cAAAGUCCAcGGGGGCCCUCcucgacaGCUUg- -3' miRNA: 3'- -UUUCAGGUuCCUCCGGGAGc------CGGAau -5' |
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27034 | 5' | -57.5 | NC_005832.1 | + | 89565 | 0.71 | 0.397274 |
Target: 5'- cAGG-CCAGGGGGGCCgUCaGCCUg- -3' miRNA: 3'- uUUCaGGUUCCUCCGGgAGcCGGAau -5' |
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27034 | 5' | -57.5 | NC_005832.1 | + | 92557 | 0.68 | 0.573398 |
Target: 5'- cGGGUCCGAGGAcgcgacggggacGGCUCUgGGCUg-- -3' miRNA: 3'- uUUCAGGUUCCU------------CCGGGAgCCGGaau -5' |
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27034 | 5' | -57.5 | NC_005832.1 | + | 49515 | 0.68 | 0.562916 |
Target: 5'- aAGGGUCCGAGGAGGUCa--GGCg--- -3' miRNA: 3'- -UUUCAGGUUCCUCCGGgagCCGgaau -5' |
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27034 | 5' | -57.5 | NC_005832.1 | + | 28002 | 0.69 | 0.501342 |
Target: 5'- --cGcCUAAGGAGGUCCagGGCCUg- -3' miRNA: 3'- uuuCaGGUUCCUCCGGGagCCGGAau -5' |
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27034 | 5' | -57.5 | NC_005832.1 | + | 100222 | 0.72 | 0.346667 |
Target: 5'- cGGGGUCCGAGGAGGCaaaCGGCUUc- -3' miRNA: 3'- -UUUCAGGUUCCUCCGggaGCCGGAau -5' |
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27034 | 5' | -57.5 | NC_005832.1 | + | 80021 | 0.74 | 0.279747 |
Target: 5'- aAGGGUCCGAGGccauGGCcgcccucuCCUCGGCCUg- -3' miRNA: 3'- -UUUCAGGUUCCu---CCG--------GGAGCCGGAau -5' |
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27034 | 5' | -57.5 | NC_005832.1 | + | 51887 | 0.78 | 0.14223 |
Target: 5'- uAAAGaCCAGGGAGGCCCUggguauggcucaggCGGCCUUu -3' miRNA: 3'- -UUUCaGGUUCCUCCGGGA--------------GCCGGAAu -5' |
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27034 | 5' | -57.5 | NC_005832.1 | + | 78277 | 0.66 | 0.70036 |
Target: 5'- --cGUCCuuGaAGGUCCUUGGCCUg- -3' miRNA: 3'- uuuCAGGuuCcUCCGGGAGCCGGAau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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