miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27035 3' -57.2 NC_005832.1 + 11353 0.66 0.812663
Target:  5'- aCGAGCUCGuguaaaaaguuucUGAGGAGcGccgcucCCCUGGcCa -3'
miRNA:   3'- -GCUCGAGU-------------ACUCCUC-Ca-----GGGACCuGc -5'
27035 3' -57.2 NC_005832.1 + 32334 0.66 0.80465
Target:  5'- gGGGCUg--GAGGGGGaUCCUugUGGGCu -3'
miRNA:   3'- gCUCGAguaCUCCUCC-AGGG--ACCUGc -5'
27035 3' -57.2 NC_005832.1 + 39241 0.66 0.80465
Target:  5'- -aGGCUCGggaucGGGGAccgugaaccuggGGUCCC-GGACGg -3'
miRNA:   3'- gcUCGAGUa----CUCCU------------CCAGGGaCCUGC- -5'
27035 3' -57.2 NC_005832.1 + 66706 0.66 0.795595
Target:  5'- cCGGGaC-CGUGuuuGGGGaccuGUCCCUGGACa -3'
miRNA:   3'- -GCUC-GaGUACu--CCUC----CAGGGACCUGc -5'
27035 3' -57.2 NC_005832.1 + 59899 0.66 0.786389
Target:  5'- uGAGaUCcuggAUGAGGAGG-CUCUGGAgGg -3'
miRNA:   3'- gCUCgAG----UACUCCUCCaGGGACCUgC- -5'
27035 3' -57.2 NC_005832.1 + 11780 0.66 0.777982
Target:  5'- -uGGCUCGgccggGGGGAGGUCgacgagggcacccugCUGGACGc -3'
miRNA:   3'- gcUCGAGUa----CUCCUCCAGg--------------GACCUGC- -5'
27035 3' -57.2 NC_005832.1 + 56547 0.66 0.767561
Target:  5'- uGGGCgcuccCGUGGGaguGGGGUUCCUGGcCGg -3'
miRNA:   3'- gCUCGa----GUACUC---CUCCAGGGACCuGC- -5'
27035 3' -57.2 NC_005832.1 + 92603 0.67 0.745303
Target:  5'- aGAGaaaaguacaaacucCUCAccAGGAGGcugUCCCUGGACa -3'
miRNA:   3'- gCUC--------------GAGUacUCCUCC---AGGGACCUGc -5'
27035 3' -57.2 NC_005832.1 + 33623 0.67 0.728501
Target:  5'- aGAGUUUucUGAGaaAGG-CCCUGGACGa -3'
miRNA:   3'- gCUCGAGu-ACUCc-UCCaGGGACCUGC- -5'
27035 3' -57.2 NC_005832.1 + 75757 0.68 0.702342
Target:  5'- aGGGC-CGUGAGGuccgcugcgggcgagAGGUCCauugguCUGGGCGc -3'
miRNA:   3'- gCUCGaGUACUCC---------------UCCAGG------GACCUGC- -5'
27035 3' -57.2 NC_005832.1 + 72567 0.68 0.69726
Target:  5'- uGGGgaCGUGGGGccccugggcuucaGGGUCCCgacgucguagUGGACGg -3'
miRNA:   3'- gCUCgaGUACUCC-------------UCCAGGG----------ACCUGC- -5'
27035 3' -57.2 NC_005832.1 + 10925 0.68 0.688077
Target:  5'- uCGGGCU--UGAGGAGGUCUCccgaguUGGAg- -3'
miRNA:   3'- -GCUCGAguACUCCUCCAGGG------ACCUgc -5'
27035 3' -57.2 NC_005832.1 + 56481 0.68 0.657228
Target:  5'- uGGGuCUUAUagGAGGAGGagcaguggCCCUGGGCu -3'
miRNA:   3'- gCUC-GAGUA--CUCCUCCa-------GGGACCUGc -5'
27035 3' -57.2 NC_005832.1 + 105021 0.69 0.626192
Target:  5'- aGAcGC-CAUGAGGAGGUaCCaGGGCa -3'
miRNA:   3'- gCU-CGaGUACUCCUCCAgGGaCCUGc -5'
27035 3' -57.2 NC_005832.1 + 11698 0.69 0.595197
Target:  5'- aCGucGC-CAUGAGGAGGgccgUCCaGGACGa -3'
miRNA:   3'- -GCu-CGaGUACUCCUCCa---GGGaCCUGC- -5'
27035 3' -57.2 NC_005832.1 + 46198 0.69 0.595197
Target:  5'- -cGGCUCAggcccuccugGAGGAcaGGgacCCCUGGGCGg -3'
miRNA:   3'- gcUCGAGUa---------CUCCU--CCa--GGGACCUGC- -5'
27035 3' -57.2 NC_005832.1 + 42516 0.7 0.574659
Target:  5'- gCGugcuGCUcCAUGAGGAGGgccgccaugCUCUGGugGu -3'
miRNA:   3'- -GCu---CGA-GUACUCCUCCa--------GGGACCugC- -5'
27035 3' -57.2 NC_005832.1 + 32486 0.7 0.554287
Target:  5'- -cAGCUCAUGuuGGAGGgCCCUacgcGGGCGc -3'
miRNA:   3'- gcUCGAGUACu-CCUCCaGGGA----CCUGC- -5'
27035 3' -57.2 NC_005832.1 + 79116 0.71 0.514248
Target:  5'- --cGCUUAcGAGGAGGUCCgUgaGGACGu -3'
miRNA:   3'- gcuCGAGUaCUCCUCCAGGgA--CCUGC- -5'
27035 3' -57.2 NC_005832.1 + 12542 0.71 0.51129
Target:  5'- cCGAGCUCAUcAGGAGuguguuccucccgaGUUUCUGGACa -3'
miRNA:   3'- -GCUCGAGUAcUCCUC--------------CAGGGACCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.