Results 41 - 48 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
27035 | 5' | -60.3 | NC_005832.1 | + | 72701 | 0.66 | 0.706516 |
Target: 5'- aCCCUgaaGCcCAGGgGCCCCaCGuccccACGGGGa -3' miRNA: 3'- gGGGA---UGcGUCUgCGGGG-GC-----UGCUCC- -5' |
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27035 | 5' | -60.3 | NC_005832.1 | + | 47918 | 0.66 | 0.677038 |
Target: 5'- aCCCCgAgGCGGAgGUCCuggCCGA-GAGGg -3' miRNA: 3'- -GGGGaUgCGUCUgCGGG---GGCUgCUCC- -5' |
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27035 | 5' | -60.3 | NC_005832.1 | + | 13169 | 0.66 | 0.677038 |
Target: 5'- cCCCCgagcugGCAGcCGUCUCCGA-GAGGc -3' miRNA: 3'- -GGGGaug---CGUCuGCGGGGGCUgCUCC- -5' |
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27035 | 5' | -60.3 | NC_005832.1 | + | 80048 | 0.66 | 0.657198 |
Target: 5'- gCUCCUGCGCGcAgGCCCCCaucgcCGaAGGg -3' miRNA: 3'- -GGGGAUGCGUcUgCGGGGGcu---GC-UCC- -5' |
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27035 | 5' | -60.3 | NC_005832.1 | + | 29525 | 0.66 | 0.667132 |
Target: 5'- cUCCCUGaGCGGAgGCCaCCagGAUGAGa -3' miRNA: 3'- -GGGGAUgCGUCUgCGG-GGg-CUGCUCc -5' |
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27035 | 5' | -60.3 | NC_005832.1 | + | 42426 | 0.66 | 0.657198 |
Target: 5'- aCCCCgugGCGGAucuggccaagcaCGUCCCUGACGgcAGGu -3' miRNA: 3'- -GGGGaugCGUCU------------GCGGGGGCUGC--UCC- -5' |
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27035 | 5' | -60.3 | NC_005832.1 | + | 26331 | 0.66 | 0.667132 |
Target: 5'- aCCUCUGCcCGGugG-CCUCGcCGGGGa -3' miRNA: 3'- -GGGGAUGcGUCugCgGGGGCuGCUCC- -5' |
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27035 | 5' | -60.3 | NC_005832.1 | + | 76190 | 0.66 | 0.716234 |
Target: 5'- aCCCUgguccuguggACGUAGGcCGCCCCgaucucuggcuCGACGcuAGGa -3' miRNA: 3'- gGGGA----------UGCGUCU-GCGGGG-----------GCUGC--UCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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