miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27036 5' -62.1 NC_005832.1 + 41818 0.67 0.491378
Target:  5'- aGCCCCcguGCCcaGACGGcaaACCCUGGGAg- -3'
miRNA:   3'- -UGGGGu--CGGa-CUGCC---UGGGGCUCUgc -5'
27036 5' -62.1 NC_005832.1 + 67051 0.67 0.491378
Target:  5'- gGCCgCgggcguaaagaGGCCUGACcuGGACgCCGAGGCc -3'
miRNA:   3'- -UGGgG-----------UCGGACUG--CCUGgGGCUCUGc -5'
27036 5' -62.1 NC_005832.1 + 11813 0.67 0.482072
Target:  5'- uGCCCUGGCuCUGGcCGGGCuCCuCGuGAUGg -3'
miRNA:   3'- -UGGGGUCG-GACU-GCCUG-GG-GCuCUGC- -5'
27036 5' -62.1 NC_005832.1 + 74206 0.68 0.44574
Target:  5'- cAUCCCAGCCUGGacacCGGGa-UCGAGugGa -3'
miRNA:   3'- -UGGGGUCGGACU----GCCUggGGCUCugC- -5'
27036 5' -62.1 NC_005832.1 + 91248 0.68 0.436898
Target:  5'- cACCCUcuuuAGCCUGugGG-CCuuGGuGGCGu -3'
miRNA:   3'- -UGGGG----UCGGACugCCuGGggCU-CUGC- -5'
27036 5' -62.1 NC_005832.1 + 55967 0.68 0.436898
Target:  5'- gACCCCaccaccacggcGGcCCUGACcGGCUCCGAGAgGu -3'
miRNA:   3'- -UGGGG-----------UC-GGACUGcCUGGGGCUCUgC- -5'
27036 5' -62.1 NC_005832.1 + 9732 0.68 0.434265
Target:  5'- uGCCCCAGgauguggaggagcuCCUGACGGugUCUcccgugGAGACc -3'
miRNA:   3'- -UGGGGUC--------------GGACUGCCugGGG------CUCUGc -5'
27036 5' -62.1 NC_005832.1 + 52930 0.68 0.41952
Target:  5'- aGCCCCugGGCagcAUGG-CCCCGGGACGc -3'
miRNA:   3'- -UGGGG--UCGgacUGCCuGGGGCUCUGC- -5'
27036 5' -62.1 NC_005832.1 + 91466 0.69 0.386058
Target:  5'- uACCCCAGCUaGGgGGAgucucgacguCCCCGaAGGCa -3'
miRNA:   3'- -UGGGGUCGGaCUgCCU----------GGGGC-UCUGc -5'
27036 5' -62.1 NC_005832.1 + 47272 0.69 0.386057
Target:  5'- gACCCC-GCC-GACGGaaagcgaguGCCCUGGGGCc -3'
miRNA:   3'- -UGGGGuCGGaCUGCC---------UGGGGCUCUGc -5'
27036 5' -62.1 NC_005832.1 + 53993 0.69 0.386057
Target:  5'- aGCCCCucucCCUGGCGGugCCgUGAG-CGg -3'
miRNA:   3'- -UGGGGuc--GGACUGCCugGG-GCUCuGC- -5'
27036 5' -62.1 NC_005832.1 + 4832 0.69 0.381193
Target:  5'- cGCCCCGuacucugcgugcgacGCgUGugGGGCCCaGAGGCc -3'
miRNA:   3'- -UGGGGU---------------CGgACugCCUGGGgCUCUGc -5'
27036 5' -62.1 NC_005832.1 + 20298 0.7 0.362144
Target:  5'- aACCCCAGgCUGAacauaCCCGAGACu -3'
miRNA:   3'- -UGGGGUCgGACUgccugGGGCUCUGc -5'
27036 5' -62.1 NC_005832.1 + 72786 0.7 0.362144
Target:  5'- gACCCUuugGGCCgu-CGGGCCCCGcGGGCc -3'
miRNA:   3'- -UGGGG---UCGGacuGCCUGGGGC-UCUGc -5'
27036 5' -62.1 NC_005832.1 + 72894 0.7 0.362144
Target:  5'- cGCCCCuguuGCCUGuagggcccucUGGGCCCCuGGGACc -3'
miRNA:   3'- -UGGGGu---CGGACu---------GCCUGGGG-CUCUGc -5'
27036 5' -62.1 NC_005832.1 + 80880 0.7 0.346783
Target:  5'- aACCCCAGgUUUGA-GG-CCCCGGGACc -3'
miRNA:   3'- -UGGGGUC-GGACUgCCuGGGGCUCUGc -5'
27036 5' -62.1 NC_005832.1 + 43280 0.71 0.31819
Target:  5'- uUCCCAGCCUGACGGuggccagcacggccuCCCUGGG-UGu -3'
miRNA:   3'- uGGGGUCGGACUGCCu--------------GGGGCUCuGC- -5'
27036 5' -62.1 NC_005832.1 + 90795 0.71 0.296753
Target:  5'- cGCCCuCGGCCgaGAUGaGGCUCCGAGGuCGg -3'
miRNA:   3'- -UGGG-GUCGGa-CUGC-CUGGGGCUCU-GC- -5'
27036 5' -62.1 NC_005832.1 + 10873 0.71 0.290081
Target:  5'- cGCCUCGGCCUGGgaccaGGACgCCgGGGACc -3'
miRNA:   3'- -UGGGGUCGGACUg----CCUG-GGgCUCUGc -5'
27036 5' -62.1 NC_005832.1 + 78799 0.71 0.290081
Target:  5'- uGCgCCGGCCacucuggGGCGGgcuugaACCCCGGGAUGg -3'
miRNA:   3'- -UGgGGUCGGa------CUGCC------UGGGGCUCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.