miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27037 3' -47 NC_005832.1 + 36584 0.7 0.978546
Target:  5'- uGCAGGUGCGGAaaggccauGACcgagGCCGcCAGgGUCg -3'
miRNA:   3'- -UGUUCAUGUUU--------UUGa---CGGU-GUCgCAG- -5'
27037 3' -47 NC_005832.1 + 96722 0.72 0.943622
Target:  5'- uACAGGUGCAuggccaccgucuuuGAGACgGCagacucuCACGGCGUCa -3'
miRNA:   3'- -UGUUCAUGU--------------UUUUGaCG-------GUGUCGCAG- -5'
27037 3' -47 NC_005832.1 + 85645 0.72 0.935256
Target:  5'- gGCAGGUGCGGGGGCUucaGCCuCAGaGUCu -3'
miRNA:   3'- -UGUUCAUGUUUUUGA---CGGuGUCgCAG- -5'
27037 3' -47 NC_005832.1 + 97288 0.72 0.923748
Target:  5'- -gGAGUcCAGGcucuUUGCCACGGCGUCu -3'
miRNA:   3'- ugUUCAuGUUUuu--GACGGUGUCGCAG- -5'
27037 3' -47 NC_005832.1 + 66128 0.73 0.911068
Target:  5'- -aGAGUGugaAAAGAUUGCCGCGGCGg- -3'
miRNA:   3'- ugUUCAUg--UUUUUGACGGUGUCGCag -5'
27037 3' -47 NC_005832.1 + 44618 0.74 0.889881
Target:  5'- -aGAGgcugGCAuAGACUGCUgggACAGCGUCc -3'
miRNA:   3'- ugUUCa---UGUuUUUGACGG---UGUCGCAG- -5'
27037 3' -47 NC_005832.1 + 66320 0.75 0.840191
Target:  5'- -gAGGUACGAGAACgucCCGCAGcCGUCu -3'
miRNA:   3'- ugUUCAUGUUUUUGac-GGUGUC-GCAG- -5'
27037 3' -47 NC_005832.1 + 4281 0.76 0.802322
Target:  5'- uGCGAGUGCAccguGACUGCCGUGGUGUUu -3'
miRNA:   3'- -UGUUCAUGUuu--UUGACGGUGUCGCAG- -5'
27037 3' -47 NC_005832.1 + 29156 0.76 0.791348
Target:  5'- -gGAGUGCAAAAGauugugcUUGCCGCAGCGa- -3'
miRNA:   3'- ugUUCAUGUUUUU-------GACGGUGUCGCag -5'
27037 3' -47 NC_005832.1 + 94195 0.81 0.538737
Target:  5'- uCAAGUACAucAGGGCcGCCACGGCGUg -3'
miRNA:   3'- uGUUCAUGU--UUUUGaCGGUGUCGCAg -5'
27037 3' -47 NC_005832.1 + 13398 1.1 0.011641
Target:  5'- cACAAGUACAAAAACUGCCACAGCGUCc -3'
miRNA:   3'- -UGUUCAUGUUUUUGACGGUGUCGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.