miRNA display CGI


Results 1 - 11 of 11 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27037 5' -53.8 NC_005832.1 + 4899 0.66 0.927956
Target:  5'- -aGACGUg--ACAgcaCCUCUUGAGCCa -3'
miRNA:   3'- gaCUGCGacaUGUg--GGAGAGCUUGGa -5'
27037 5' -53.8 NC_005832.1 + 47981 0.66 0.903983
Target:  5'- -gGACGUcGgGCcCCCUCUCG-ACCUg -3'
miRNA:   3'- gaCUGCGaCaUGuGGGAGAGCuUGGA- -5'
27037 5' -53.8 NC_005832.1 + 77074 0.67 0.897353
Target:  5'- uCUGACGCcccaGU-CACCgUCUgaCGGGCCUg -3'
miRNA:   3'- -GACUGCGa---CAuGUGGgAGA--GCUUGGA- -5'
27037 5' -53.8 NC_005832.1 + 33009 0.67 0.897353
Target:  5'- -aGACGagugGUGCAUggUCUCGGGCCUg -3'
miRNA:   3'- gaCUGCga--CAUGUGggAGAGCUUGGA- -5'
27037 5' -53.8 NC_005832.1 + 56870 0.67 0.883349
Target:  5'- cCUGGCGCaGUACGCCUacgUCUCcAACa- -3'
miRNA:   3'- -GACUGCGaCAUGUGGG---AGAGcUUGga -5'
27037 5' -53.8 NC_005832.1 + 54710 0.67 0.883349
Target:  5'- uUGACGUgGUcCACCCUCUUGcacaacaccAGCCa -3'
miRNA:   3'- gACUGCGaCAuGUGGGAGAGC---------UUGGa -5'
27037 5' -53.8 NC_005832.1 + 40259 0.67 0.875984
Target:  5'- gUGACGCUGUcuauuaGgGCCCUCgcaaugUCGGcCCUg -3'
miRNA:   3'- gACUGCGACA------UgUGGGAG------AGCUuGGA- -5'
27037 5' -53.8 NC_005832.1 + 20038 0.68 0.818217
Target:  5'- -cGAUGCUGUGCGCCaccaUCaugaGGGCCa -3'
miRNA:   3'- gaCUGCGACAUGUGGg---AGag--CUUGGa -5'
27037 5' -53.8 NC_005832.1 + 6105 0.69 0.771332
Target:  5'- aUGACGCUcuuuggGUucaugagaaGCAUCgUCUCGGACCUg -3'
miRNA:   3'- gACUGCGA------CA---------UGUGGgAGAGCUUGGA- -5'
27037 5' -53.8 NC_005832.1 + 90300 0.71 0.658213
Target:  5'- cCUGcACGCUcucgccugGCAUCCUCUUGGGCCUc -3'
miRNA:   3'- -GAC-UGCGAca------UGUGGGAGAGCUUGGA- -5'
27037 5' -53.8 NC_005832.1 + 13360 1.09 0.003305
Target:  5'- cCUGACGCUGUACACCCUCUCGAACCUg -3'
miRNA:   3'- -GACUGCGACAUGUGGGAGAGCUUGGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.