miRNA display CGI


Results 1 - 20 of 52 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27038 3' -54.5 NC_005832.1 + 7905 0.66 0.905034
Target:  5'- -gCAGACUGGgaGAGGgUGAGGACAg -3'
miRNA:   3'- caGUUUGGCCggUUCUgGCUCCUGUg -5'
27038 3' -54.5 NC_005832.1 + 98180 0.66 0.905034
Target:  5'- uUCGGuCUGGCCGAcGCCuGAGGACc- -3'
miRNA:   3'- cAGUUuGGCCGGUUcUGG-CUCCUGug -5'
27038 3' -54.5 NC_005832.1 + 17122 0.66 0.89845
Target:  5'- uUCGuuCUGGCCuguGGCCG-GGGCGg -3'
miRNA:   3'- cAGUuuGGCCGGuu-CUGGCuCCUGUg -5'
27038 3' -54.5 NC_005832.1 + 47564 0.66 0.89845
Target:  5'- -aCAGGCUGGaCUuuguGGCCG-GGACGCu -3'
miRNA:   3'- caGUUUGGCC-GGuu--CUGGCuCCUGUG- -5'
27038 3' -54.5 NC_005832.1 + 9922 0.66 0.897777
Target:  5'- -aCGAAgCGGgCAggGGACCGGgcuccacGGACACg -3'
miRNA:   3'- caGUUUgGCCgGU--UCUGGCU-------CCUGUG- -5'
27038 3' -54.5 NC_005832.1 + 740 0.66 0.891616
Target:  5'- aGUCuc-CCGGCCu-GGCCGAGaGGUACu -3'
miRNA:   3'- -CAGuuuGGCCGGuuCUGGCUC-CUGUG- -5'
27038 3' -54.5 NC_005832.1 + 44542 0.66 0.891616
Target:  5'- -gCAAGCUGGgCAAGACCuacGACGCc -3'
miRNA:   3'- caGUUUGGCCgGUUCUGGcucCUGUG- -5'
27038 3' -54.5 NC_005832.1 + 26604 0.66 0.891616
Target:  5'- uUUAAGgUGGCgAGGGCCGccGGGugGCu -3'
miRNA:   3'- cAGUUUgGCCGgUUCUGGC--UCCugUG- -5'
27038 3' -54.5 NC_005832.1 + 97269 0.66 0.890919
Target:  5'- aGUCGccagccuGGCCGGCCucGAGGCCcuGGuCGCa -3'
miRNA:   3'- -CAGU-------UUGGCCGG--UUCUGGcuCCuGUG- -5'
27038 3' -54.5 NC_005832.1 + 42193 0.66 0.884536
Target:  5'- uGUCuugguCCaGGCCAAGACUGAcugcaGGCGCa -3'
miRNA:   3'- -CAGuuu--GG-CCGGUUCUGGCUc----CUGUG- -5'
27038 3' -54.5 NC_005832.1 + 614 0.66 0.884536
Target:  5'- cUCucGGCCaGGCCGGGagacucGCCGAacauGGACACa -3'
miRNA:   3'- cAGu-UUGG-CCGGUUC------UGGCU----CCUGUG- -5'
27038 3' -54.5 NC_005832.1 + 38337 0.66 0.877216
Target:  5'- cGUCcAGCUGGgUaaaGAGcCUGAGGACGCa -3'
miRNA:   3'- -CAGuUUGGCCgG---UUCuGGCUCCUGUG- -5'
27038 3' -54.5 NC_005832.1 + 64105 0.66 0.877216
Target:  5'- --aGAGCCGGUC-GGGCCGAGG-Cu- -3'
miRNA:   3'- cagUUUGGCCGGuUCUGGCUCCuGug -5'
27038 3' -54.5 NC_005832.1 + 41988 0.67 0.861874
Target:  5'- cGUCGGuccucCUGGCCAucGCCGGGGugAg -3'
miRNA:   3'- -CAGUUu----GGCCGGUucUGGCUCCugUg -5'
27038 3' -54.5 NC_005832.1 + 29334 0.67 0.861874
Target:  5'- ----cGCCGGCUAccucauGACCGAGGAgAg -3'
miRNA:   3'- caguuUGGCCGGUu-----CUGGCUCCUgUg -5'
27038 3' -54.5 NC_005832.1 + 90855 0.67 0.861874
Target:  5'- ------gCGGCCAAGGCUaGGGGAgGCa -3'
miRNA:   3'- caguuugGCCGGUUCUGG-CUCCUgUG- -5'
27038 3' -54.5 NC_005832.1 + 4635 0.67 0.861874
Target:  5'- aUgGGAUCGGCgGGGGCCGAcGACGa -3'
miRNA:   3'- cAgUUUGGCCGgUUCUGGCUcCUGUg -5'
27038 3' -54.5 NC_005832.1 + 36520 0.67 0.853864
Target:  5'- --gAGGCgGcguacGCCAGGGCCGGGGGcCACa -3'
miRNA:   3'- cagUUUGgC-----CGGUUCUGGCUCCU-GUG- -5'
27038 3' -54.5 NC_005832.1 + 10029 0.67 0.837203
Target:  5'- cGUCGGGCgcguCGGCCGcggAGGCCGuGGcuCACg -3'
miRNA:   3'- -CAGUUUG----GCCGGU---UCUGGCuCCu-GUG- -5'
27038 3' -54.5 NC_005832.1 + 11940 0.67 0.828567
Target:  5'- --gGAGcCCGGCCAGaGCC-AGGGCACc -3'
miRNA:   3'- cagUUU-GGCCGGUUcUGGcUCCUGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.