miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27039 3' -53.4 NC_005832.1 + 75906 0.73 0.640644
Target:  5'- gUCAgGGCCACCaGGGCccuggccaaggagaGGGGAGAGGCa -3'
miRNA:   3'- -GGUaCUGGUGG-CCUG--------------UCUCUUUCCGc -5'
27039 3' -53.4 NC_005832.1 + 31156 0.68 0.856576
Target:  5'- aCGUGGCgGCUGGAaGGAGGGuGGUGc -3'
miRNA:   3'- gGUACUGgUGGCCUgUCUCUUuCCGC- -5'
27039 3' -53.4 NC_005832.1 + 32801 0.67 0.89374
Target:  5'- aCCAcgacUGcACCACCGccucgucCGGGGAGAGGCu -3'
miRNA:   3'- -GGU----AC-UGGUGGCcu-----GUCUCUUUCCGc -5'
27039 3' -53.4 NC_005832.1 + 16374 0.67 0.906932
Target:  5'- gCgGUGGCCucAgCGGACAGGGugacguuAAGGCu -3'
miRNA:   3'- -GgUACUGG--UgGCCUGUCUCu------UUCCGc -5'
27039 3' -53.4 NC_005832.1 + 32615 0.67 0.919122
Target:  5'- aCCAcGACCGCaccaccgccuCGucCGGGGAGAGGCu -3'
miRNA:   3'- -GGUaCUGGUG----------GCcuGUCUCUUUCCGc -5'
27039 3' -53.4 NC_005832.1 + 96729 0.67 0.924277
Target:  5'- gCAUGGCCACCGucuuugaGACGGcAGAcucucacGGCGu -3'
miRNA:   3'- gGUACUGGUGGC-------CUGUC-UCUuu-----CCGC- -5'
27039 3' -53.4 NC_005832.1 + 20098 0.67 0.924837
Target:  5'- aCAUGGCgGCagaGGGCAaAGAcAGGCa -3'
miRNA:   3'- gGUACUGgUGg--CCUGUcUCUuUCCGc -5'
27039 3' -53.4 NC_005832.1 + 43833 0.66 0.930297
Target:  5'- -gGUGGCCAUCauGACGGcGGGAGGCu -3'
miRNA:   3'- ggUACUGGUGGc-CUGUCuCUUUCCGc -5'
27039 3' -53.4 NC_005832.1 + 92481 0.66 0.935502
Target:  5'- aCCAgucgGACUACuCuGACGaGGAGAGGCa -3'
miRNA:   3'- -GGUa---CUGGUG-GcCUGUcUCUUUCCGc -5'
27039 3' -53.4 NC_005832.1 + 43147 0.69 0.848469
Target:  5'- gCCGugcUGGCCACCGucaGGCuGGGAAAGGg- -3'
miRNA:   3'- -GGU---ACUGGUGGC---CUGuCUCUUUCCgc -5'
27039 3' -53.4 NC_005832.1 + 32082 0.69 0.831635
Target:  5'- cCCA-GGCCacGCCGGGuuCAGGGAccaguucucuAGGGCGg -3'
miRNA:   3'- -GGUaCUGG--UGGCCU--GUCUCU----------UUCCGC- -5'
27039 3' -53.4 NC_005832.1 + 44115 0.69 0.831635
Target:  5'- cCCGUgGACCAaaGGACGGGaGGAGGUc -3'
miRNA:   3'- -GGUA-CUGGUggCCUGUCUcUUUCCGc -5'
27039 3' -53.4 NC_005832.1 + 6517 0.72 0.685882
Target:  5'- uCUGUGGCCcugugcgggGCCagGGACAGGGGGcAGGCGg -3'
miRNA:   3'- -GGUACUGG---------UGG--CCUGUCUCUU-UCCGC- -5'
27039 3' -53.4 NC_005832.1 + 94190 0.71 0.706669
Target:  5'- cCCGUGAaaGCCGGGCu--GGGAGGCc -3'
miRNA:   3'- -GGUACUggUGGCCUGucuCUUUCCGc -5'
27039 3' -53.4 NC_005832.1 + 4969 0.7 0.757285
Target:  5'- uCC-UGGCCACCuuGGACAGGGuAGGGa- -3'
miRNA:   3'- -GGuACUGGUGG--CCUGUCUCuUUCCgc -5'
27039 3' -53.4 NC_005832.1 + 8228 0.7 0.767095
Target:  5'- cCCGUGAgaGCCGGuACGGGGuacauGGGGCu -3'
miRNA:   3'- -GGUACUggUGGCC-UGUCUCu----UUCCGc -5'
27039 3' -53.4 NC_005832.1 + 67946 0.7 0.776777
Target:  5'- -aGUGGCCAgaguaCGGGCAGAGGAgcgacccugaGGGCu -3'
miRNA:   3'- ggUACUGGUg----GCCUGUCUCUU----------UCCGc -5'
27039 3' -53.4 NC_005832.1 + 101858 0.7 0.795717
Target:  5'- aUCAaGGCCGCCGGAgCAGAGGAGauGuGCu -3'
miRNA:   3'- -GGUaCUGGUGGCCU-GUCUCUUU--C-CGc -5'
27039 3' -53.4 NC_005832.1 + 32714 0.7 0.804956
Target:  5'- aCCGU-ACCACCGccucgucCGGGGAGAGGCu -3'
miRNA:   3'- -GGUAcUGGUGGCcu-----GUCUCUUUCCGc -5'
27039 3' -53.4 NC_005832.1 + 96866 0.69 0.822924
Target:  5'- gCGUGACCagGCUGGGCAGGuccAucGGCGa -3'
miRNA:   3'- gGUACUGG--UGGCCUGUCUc--UuuCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.