miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27039 3' -53.4 NC_005832.1 + 11148 0.67 0.89374
Target:  5'- cCCAUGACCAaCGaGCcuGGAGAGcuGGCGg -3'
miRNA:   3'- -GGUACUGGUgGCcUG--UCUCUUu-CCGC- -5'
27039 3' -53.4 NC_005832.1 + 32801 0.67 0.89374
Target:  5'- aCCAcgacUGcACCACCGccucgucCGGGGAGAGGCu -3'
miRNA:   3'- -GGU----AC-UGGUGGCcu-----GUCUCUUUCCGc -5'
27039 3' -53.4 NC_005832.1 + 11784 0.68 0.886776
Target:  5'- cCCcUGGCUcgGCCGGGgGGAGGucgacgAGGGCa -3'
miRNA:   3'- -GGuACUGG--UGGCCUgUCUCU------UUCCGc -5'
27039 3' -53.4 NC_005832.1 + 91436 0.68 0.886776
Target:  5'- gUCAUGGCCaaGCUGGACGuGGccAGGCa -3'
miRNA:   3'- -GGUACUGG--UGGCCUGUcUCuuUCCGc -5'
27039 3' -53.4 NC_005832.1 + 1665 0.68 0.879573
Target:  5'- uCCAggcucaGGCCAUCGGcAguGAGGcuGGCGg -3'
miRNA:   3'- -GGUa-----CUGGUGGCC-UguCUCUuuCCGC- -5'
27039 3' -53.4 NC_005832.1 + 31156 0.68 0.856576
Target:  5'- aCGUGGCgGCUGGAaGGAGGGuGGUGc -3'
miRNA:   3'- gGUACUGgUGGCCUgUCUCUUuCCGC- -5'
27039 3' -53.4 NC_005832.1 + 43147 0.69 0.848469
Target:  5'- gCCGugcUGGCCACCGucaGGCuGGGAAAGGg- -3'
miRNA:   3'- -GGU---ACUGGUGGC---CUGuCUCUUUCCgc -5'
27039 3' -53.4 NC_005832.1 + 16489 0.69 0.83931
Target:  5'- ---aGGCCACCGcGGCggccgcaGGAGGcgGAGGCGa -3'
miRNA:   3'- gguaCUGGUGGC-CUG-------UCUCU--UUCCGC- -5'
27039 3' -53.4 NC_005832.1 + 32082 0.69 0.831635
Target:  5'- cCCA-GGCCacGCCGGGuuCAGGGAccaguucucuAGGGCGg -3'
miRNA:   3'- -GGUaCUGG--UGGCCU--GUCUCU----------UUCCGC- -5'
27039 3' -53.4 NC_005832.1 + 44115 0.69 0.831635
Target:  5'- cCCGUgGACCAaaGGACGGGaGGAGGUc -3'
miRNA:   3'- -GGUA-CUGGUggCCUGUCUcUUUCCGc -5'
27039 3' -53.4 NC_005832.1 + 96866 0.69 0.822924
Target:  5'- gCGUGACCagGCUGGGCAGGuccAucGGCGa -3'
miRNA:   3'- gGUACUGG--UGGCCUGUCUc--UuuCCGC- -5'
27039 3' -53.4 NC_005832.1 + 1510 0.69 0.814028
Target:  5'- gCgGUGAUCGacCCGGACcacggcGAGAGGGGCa -3'
miRNA:   3'- -GgUACUGGU--GGCCUGu-----CUCUUUCCGc -5'
27039 3' -53.4 NC_005832.1 + 31530 0.69 0.814028
Target:  5'- cCCAgUGcGCCACCGcuCAGuguAGAGAGGCGg -3'
miRNA:   3'- -GGU-AC-UGGUGGCcuGUC---UCUUUCCGC- -5'
27039 3' -53.4 NC_005832.1 + 32714 0.7 0.804956
Target:  5'- aCCGU-ACCACCGccucgucCGGGGAGAGGCu -3'
miRNA:   3'- -GGUAcUGGUGGCcu-----GUCUCUUUCCGc -5'
27039 3' -53.4 NC_005832.1 + 10332 0.7 0.804956
Target:  5'- cCCAUGACagGCUcaaGGcCAgGGGAGAGGCGg -3'
miRNA:   3'- -GGUACUGg-UGG---CCuGU-CUCUUUCCGC- -5'
27039 3' -53.4 NC_005832.1 + 101858 0.7 0.795717
Target:  5'- aUCAaGGCCGCCGGAgCAGAGGAGauGuGCu -3'
miRNA:   3'- -GGUaCUGGUGGCCU-GUCUCUUU--C-CGc -5'
27039 3' -53.4 NC_005832.1 + 71677 0.7 0.786321
Target:  5'- aUCAUGACUGCCacgacugcaGACAGGGccacGAGGGCGg -3'
miRNA:   3'- -GGUACUGGUGGc--------CUGUCUC----UUUCCGC- -5'
27039 3' -53.4 NC_005832.1 + 32268 0.7 0.776777
Target:  5'- gCCAUGAuguuguCUGCCGuGguGAGggGGGCGa -3'
miRNA:   3'- -GGUACU------GGUGGCcUguCUCuuUCCGC- -5'
27039 3' -53.4 NC_005832.1 + 67946 0.7 0.776777
Target:  5'- -aGUGGCCAgaguaCGGGCAGAGGAgcgacccugaGGGCu -3'
miRNA:   3'- ggUACUGGUg----GCCUGUCUCUU----------UCCGc -5'
27039 3' -53.4 NC_005832.1 + 8228 0.7 0.767095
Target:  5'- cCCGUGAgaGCCGGuACGGGGuacauGGGGCu -3'
miRNA:   3'- -GGUACUggUGGCC-UGUCUCu----UUCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.