miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27039 5' -62.7 NC_005832.1 + 56546 0.66 0.508992
Target:  5'- gGGCGCuCCcGugggagugggguuCCUGGCCGGcAGGAGGg -3'
miRNA:   3'- -UCGUGcGGaC-------------GGACCGGCC-UCCUCUg -5'
27039 5' -62.7 NC_005832.1 + 6108 0.66 0.508992
Target:  5'- cGCG-GCCUGCCUcauggagguucgcGGCUGcGAGGguugGGACg -3'
miRNA:   3'- uCGUgCGGACGGA-------------CCGGC-CUCC----UCUG- -5'
27039 5' -62.7 NC_005832.1 + 43327 0.66 0.500355
Target:  5'- -cCACGCCaGCCUGGCgGGAGc---- -3'
miRNA:   3'- ucGUGCGGaCGGACCGgCCUCcucug -5'
27039 5' -62.7 NC_005832.1 + 5232 0.66 0.481399
Target:  5'- cGuCugGCCacUGCCUGGCguUGGgucugcagcaGGGAGGCa -3'
miRNA:   3'- uC-GugCGG--ACGGACCG--GCC----------UCCUCUG- -5'
27039 5' -62.7 NC_005832.1 + 10025 0.66 0.472053
Target:  5'- gGGCGCGUCgGCCgcggaGGCCGuggcucacguGAGGcuGGACg -3'
miRNA:   3'- -UCGUGCGGaCGGa----CCGGC----------CUCC--UCUG- -5'
27039 5' -62.7 NC_005832.1 + 745 0.66 0.453641
Target:  5'- cGGCGaGUCUcccgGCCUGGCCGaGAGGuacugcaugagGGGCg -3'
miRNA:   3'- -UCGUgCGGA----CGGACCGGC-CUCC-----------UCUG- -5'
27039 5' -62.7 NC_005832.1 + 1447 0.66 0.453641
Target:  5'- aGGgGgGCCUGU--GGCUggGGAGGGGACg -3'
miRNA:   3'- -UCgUgCGGACGgaCCGG--CCUCCUCUG- -5'
27039 5' -62.7 NC_005832.1 + 75728 0.66 0.453641
Target:  5'- cAGCACacugcgguCCUGUCUgcGGCCGuGGGGAGGu -3'
miRNA:   3'- -UCGUGc-------GGACGGA--CCGGC-CUCCUCUg -5'
27039 5' -62.7 NC_005832.1 + 65580 0.67 0.444583
Target:  5'- gGGCAgGacCCUGCCc-GCCGGgGGGAGAUu -3'
miRNA:   3'- -UCGUgC--GGACGGacCGGCC-UCCUCUG- -5'
27039 5' -62.7 NC_005832.1 + 75649 0.67 0.435627
Target:  5'- --uGCGCUUGag-GGCCGGGuGGAGGCc -3'
miRNA:   3'- ucgUGCGGACggaCCGGCCU-CCUCUG- -5'
27039 5' -62.7 NC_005832.1 + 11788 0.67 0.409399
Target:  5'- uGUACcCCUGgCUcGGCCGGGGGGaggucGACg -3'
miRNA:   3'- uCGUGcGGACgGA-CCGGCCUCCU-----CUG- -5'
27039 5' -62.7 NC_005832.1 + 56112 0.68 0.392471
Target:  5'- cGCGgGCCccgUGUCUGGCCcaaagaaGGGAGACg -3'
miRNA:   3'- uCGUgCGG---ACGGACCGGcc-----UCCUCUG- -5'
27039 5' -62.7 NC_005832.1 + 75191 0.68 0.351417
Target:  5'- cAGaCAUGUCUGCCUacuggcagggcaaGGUCaGGAGGGGAUc -3'
miRNA:   3'- -UC-GUGCGGACGGA-------------CCGG-CCUCCUCUG- -5'
27039 5' -62.7 NC_005832.1 + 48856 0.69 0.336921
Target:  5'- uGCAaGUCgacacgGCCUGGUCGGAGGcuucGACg -3'
miRNA:   3'- uCGUgCGGa-----CGGACCGGCCUCCu---CUG- -5'
27039 5' -62.7 NC_005832.1 + 47716 0.69 0.329469
Target:  5'- gGGCAUGgCgGCCgcgaGGCCGGccaAGGAGAg -3'
miRNA:   3'- -UCGUGCgGaCGGa---CCGGCC---UCCUCUg -5'
27039 5' -62.7 NC_005832.1 + 99683 0.69 0.321412
Target:  5'- aAGUACGCCUGCUUaaagacgGGC--GAGGAGAUg -3'
miRNA:   3'- -UCGUGCGGACGGA-------CCGgcCUCCUCUG- -5'
27039 5' -62.7 NC_005832.1 + 97268 0.7 0.261658
Target:  5'- uAGU-CGCCaGCCUGGCCGGccucGAGGCc -3'
miRNA:   3'- -UCGuGCGGaCGGACCGGCCuc--CUCUG- -5'
27039 5' -62.7 NC_005832.1 + 15183 1.09 0.000394
Target:  5'- aAGCACGCCUGCCUGGCCGGAGGAGACa -3'
miRNA:   3'- -UCGUGCGGACGGACCGGCCUCCUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.