miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2704 5' -59.3 NC_001491.2 + 139336 0.69 0.563378
Target:  5'- gAGCGGgGGAGaGCGGU-AGG-GGAGGCc -3'
miRNA:   3'- -UCGCUgCUUC-CGCCGcUCCuCCUCUG- -5'
2704 5' -59.3 NC_001491.2 + 139309 0.69 0.563378
Target:  5'- gAGCGGgGGAGaGCGGU-AGG-GGAGGCc -3'
miRNA:   3'- -UCGCUgCUUC-CGCCGcUCCuCCUCUG- -5'
2704 5' -59.3 NC_001491.2 + 139282 0.69 0.563378
Target:  5'- gAGCGGgGGAGaGCGGU-AGG-GGAGGCc -3'
miRNA:   3'- -UCGCUgCUUC-CGCCGcUCCuCCUCUG- -5'
2704 5' -59.3 NC_001491.2 + 139229 0.69 0.563378
Target:  5'- gAGCGGgGGAGaGCGGU-AGG-GGAGGCc -3'
miRNA:   3'- -UCGCUgCUUC-CGCCGcUCCuCCUCUG- -5'
2704 5' -59.3 NC_001491.2 + 139202 0.69 0.563378
Target:  5'- gAGCGGgGGAGaGCGGU-AGG-GGAGGCc -3'
miRNA:   3'- -UCGCUgCUUC-CGCCGcUCCuCCUCUG- -5'
2704 5' -59.3 NC_001491.2 + 139175 0.69 0.563378
Target:  5'- gAGCGGgGGAGaGCGGU-AGG-GGAGGCc -3'
miRNA:   3'- -UCGCUgCUUC-CGCCGcUCCuCCUCUG- -5'
2704 5' -59.3 NC_001491.2 + 139121 0.69 0.563378
Target:  5'- gAGCGGgGGAGaGCGGU-AGG-GGAGGCc -3'
miRNA:   3'- -UCGCUgCUUC-CGCCGcUCCuCCUCUG- -5'
2704 5' -59.3 NC_001491.2 + 139148 0.69 0.563378
Target:  5'- gAGCGGgGGAGaGCGGU-AGG-GGAGGCc -3'
miRNA:   3'- -UCGCUgCUUC-CGCCGcUCCuCCUCUG- -5'
2704 5' -59.3 NC_001491.2 + 139094 0.69 0.563378
Target:  5'- gAGCGGgGGAGaGCGGU-AGG-GGAGGCc -3'
miRNA:   3'- -UCGCUgCUUC-CGCCGcUCCuCCUCUG- -5'
2704 5' -59.3 NC_001491.2 + 139067 0.69 0.563378
Target:  5'- gAGCGGgGGAGaGCGGU-AGG-GGAGGCc -3'
miRNA:   3'- -UCGCUgCUUC-CGCCGcUCCuCCUCUG- -5'
2704 5' -59.3 NC_001491.2 + 139040 0.69 0.563378
Target:  5'- gAGCGGgGGAGaGCGGU-AGG-GGAGGCc -3'
miRNA:   3'- -UCGCUgCUUC-CGCCGcUCCuCCUCUG- -5'
2704 5' -59.3 NC_001491.2 + 125600 0.71 0.46795
Target:  5'- gGGCGgccgcugccGCGgcGGCGGCcgucgGAGGGGGGGGa -3'
miRNA:   3'- -UCGC---------UGCuuCCGCCG-----CUCCUCCUCUg -5'
2704 5' -59.3 NC_001491.2 + 125100 0.72 0.443594
Target:  5'- cGCGGcCGggGgggccgccaacuccaGCGGCGAGGAGGcgccgagAGGCg -3'
miRNA:   3'- uCGCU-GCuuC---------------CGCCGCUCCUCC-------UCUG- -5'
2704 5' -59.3 NC_001491.2 + 142646 0.72 0.438279
Target:  5'- cGCGAUGAaaccuaggggaGGGUgcacgguuauugagGGUGGGGGGGGGGCa -3'
miRNA:   3'- uCGCUGCU-----------UCCG--------------CCGCUCCUCCUCUG- -5'
2704 5' -59.3 NC_001491.2 + 1530 0.72 0.40633
Target:  5'- cGCGGCGcccccauuGGGCGGCGGuGGGcacauggagauGGAGACa -3'
miRNA:   3'- uCGCUGCu-------UCCGCCGCU-CCU-----------CCUCUG- -5'
2704 5' -59.3 NC_001491.2 + 146683 0.73 0.381526
Target:  5'- cAGCGccucGgGAGGGCaGGCGGGaGAGGGGAUc -3'
miRNA:   3'- -UCGC----UgCUUCCG-CCGCUC-CUCCUCUG- -5'
2704 5' -59.3 NC_001491.2 + 54608 0.73 0.36556
Target:  5'- gAGCGGCGGcaGCGGCGGGGgauGGuGGGGCg -3'
miRNA:   3'- -UCGCUGCUucCGCCGCUCC---UC-CUCUG- -5'
2704 5' -59.3 NC_001491.2 + 138094 0.74 0.350062
Target:  5'- uGCGGCGAAGGUGGgggccaagaCGAGGuGG-GGCg -3'
miRNA:   3'- uCGCUGCUUCCGCC---------GCUCCuCCuCUG- -5'
2704 5' -59.3 NC_001491.2 + 121526 0.74 0.347777
Target:  5'- gAGCGugGGGacgggucccccgccGGgGGCGAGGGGGucagGGACg -3'
miRNA:   3'- -UCGCugCUU--------------CCgCCGCUCCUCC----UCUG- -5'
2704 5' -59.3 NC_001491.2 + 150095 0.74 0.316216
Target:  5'- uAGUGACGuAGGCGGUagugacguagcggaaGGGGAGGAG-Ca -3'
miRNA:   3'- -UCGCUGCuUCCGCCG---------------CUCCUCCUCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.