miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2704 5' -59.3 NC_001491.2 + 1469 0.68 0.663204
Target:  5'- cGCGAaacucccuCGGGucucauGGCGGCGAGuuggaGAGGAGAUg -3'
miRNA:   3'- uCGCU--------GCUU------CCGCCGCUC-----CUCCUCUG- -5'
2704 5' -59.3 NC_001491.2 + 1530 0.72 0.40633
Target:  5'- cGCGGCGcccccauuGGGCGGCGGuGGGcacauggagauGGAGACa -3'
miRNA:   3'- uCGCUGCu-------UCCGCCGCU-CCU-----------CCUCUG- -5'
2704 5' -59.3 NC_001491.2 + 3039 0.68 0.633166
Target:  5'- gGGCGGCGAGcGaCGGCGAGcgauugcgucuaGAGGAGcaGCa -3'
miRNA:   3'- -UCGCUGCUUcC-GCCGCUC------------CUCCUC--UG- -5'
2704 5' -59.3 NC_001491.2 + 3966 0.67 0.681135
Target:  5'- uGCGACGAGGaCGGgGAGGAGuccaccaucaacGGACu -3'
miRNA:   3'- uCGCUGCUUCcGCCgCUCCUCc-----------UCUG- -5'
2704 5' -59.3 NC_001491.2 + 10806 0.67 0.683121
Target:  5'- aGGUGcAUGAGGGCcGCGAGGcAGGuguccgagAGACg -3'
miRNA:   3'- -UCGC-UGCUUCCGcCGCUCC-UCC--------UCUG- -5'
2704 5' -59.3 NC_001491.2 + 45089 0.67 0.702877
Target:  5'- cGCGGCGggGGUcucuacGGC-AGGcuuuGGGGGCu -3'
miRNA:   3'- uCGCUGCuuCCG------CCGcUCCu---CCUCUG- -5'
2704 5' -59.3 NC_001491.2 + 45188 0.66 0.751114
Target:  5'- cGCGGCGggGGCcgccgcagauuuGGcCGGGGccgcggcGGGGGCc -3'
miRNA:   3'- uCGCUGCuuCCG------------CC-GCUCCu------CCUCUG- -5'
2704 5' -59.3 NC_001491.2 + 45254 0.66 0.751114
Target:  5'- cGCGGCGggGGCcgccgcagauuuGGcCGGGGccgcggcGGGGGCc -3'
miRNA:   3'- uCGCUGCuuCCG------------CC-GCUCCu------CCUCUG- -5'
2704 5' -59.3 NC_001491.2 + 54608 0.73 0.36556
Target:  5'- gAGCGGCGGcaGCGGCGGGGgauGGuGGGGCg -3'
miRNA:   3'- -UCGCUGCUucCGCCGCUCC---UC-CUCUG- -5'
2704 5' -59.3 NC_001491.2 + 67788 0.76 0.237475
Target:  5'- cGUGACGccAGGGgGGCGAgcGGGGGAGAUg -3'
miRNA:   3'- uCGCUGC--UUCCgCCGCU--CCUCCUCUG- -5'
2704 5' -59.3 NC_001491.2 + 71033 0.74 0.313393
Target:  5'- cGGCGuuGAAGGUGcGCGcggcccgcuccaGGGAGGAGGCc -3'
miRNA:   3'- -UCGCugCUUCCGC-CGC------------UCCUCCUCUG- -5'
2704 5' -59.3 NC_001491.2 + 106052 0.67 0.699926
Target:  5'- cGCGGCGGcAGccGCGGCGAGGccaaccacgcucagAGGcGGCa -3'
miRNA:   3'- uCGCUGCU-UC--CGCCGCUCC--------------UCCuCUG- -5'
2704 5' -59.3 NC_001491.2 + 116046 0.68 0.653205
Target:  5'- gAGCGGCGGAGGCGcCGGGGcuacGACc -3'
miRNA:   3'- -UCGCUGCUUCCGCcGCUCCuccuCUG- -5'
2704 5' -59.3 NC_001491.2 + 116181 0.66 0.742585
Target:  5'- cGGCGGCGAGcccuucuccggcuccGCGGcCGcGGAGGGGAg -3'
miRNA:   3'- -UCGCUGCUUc--------------CGCC-GCuCCUCCUCUg -5'
2704 5' -59.3 NC_001491.2 + 117973 1.08 0.001658
Target:  5'- cAGCGACGAAGGCGGCGAGGAGGAGACc -3'
miRNA:   3'- -UCGCUGCUUCCGCCGCUCCUCCUCUG- -5'
2704 5' -59.3 NC_001491.2 + 119620 0.68 0.64319
Target:  5'- cGCGACGc--GCuuccCGGGGAGGAGACg -3'
miRNA:   3'- uCGCUGCuucCGcc--GCUCCUCCUCUG- -5'
2704 5' -59.3 NC_001491.2 + 121526 0.74 0.347777
Target:  5'- gAGCGugGGGacgggucccccgccGGgGGCGAGGGGGucagGGACg -3'
miRNA:   3'- -UCGCugCUU--------------CCgCCGCUCCUCC----UCUG- -5'
2704 5' -59.3 NC_001491.2 + 125100 0.72 0.443594
Target:  5'- cGCGGcCGggGgggccgccaacuccaGCGGCGAGGAGGcgccgagAGGCg -3'
miRNA:   3'- uCGCU-GCuuC---------------CGCCGCUCCUCC-------UCUG- -5'
2704 5' -59.3 NC_001491.2 + 125600 0.71 0.46795
Target:  5'- gGGCGgccgcugccGCGgcGGCGGCcgucgGAGGGGGGGGa -3'
miRNA:   3'- -UCGC---------UGCuuCCGCCG-----CUCCUCCUCUg -5'
2704 5' -59.3 NC_001491.2 + 126535 0.67 0.73206
Target:  5'- gGGUGugGGAGGUGGU-AGc-GGAGGCg -3'
miRNA:   3'- -UCGCugCUUCCGCCGcUCcuCCUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.