miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2704 5' -59.3 NC_001491.2 + 150095 0.74 0.316216
Target:  5'- uAGUGACGuAGGCGGUagugacguagcggaaGGGGAGGAG-Ca -3'
miRNA:   3'- -UCGCUGCuUCCGCCG---------------CUCCUCCUCuG- -5'
2704 5' -59.3 NC_001491.2 + 148786 0.66 0.741633
Target:  5'- cGCGGgGcucGGCGGCGGGGAgccucGGuGAUg -3'
miRNA:   3'- uCGCUgCuu-CCGCCGCUCCU-----CCuCUG- -5'
2704 5' -59.3 NC_001491.2 + 147447 0.67 0.719492
Target:  5'- cGGCccCGAgggaucguacccccGGGCGGaCGAGGAgaaGGAGGCc -3'
miRNA:   3'- -UCGcuGCU--------------UCCGCC-GCUCCU---CCUCUG- -5'
2704 5' -59.3 NC_001491.2 + 146683 0.73 0.381526
Target:  5'- cAGCGccucGgGAGGGCaGGCGGGaGAGGGGAUc -3'
miRNA:   3'- -UCGC----UgCUUCCG-CCGCUC-CUCCUCUG- -5'
2704 5' -59.3 NC_001491.2 + 144486 0.66 0.751114
Target:  5'- cGGUGGCGggGuuccGCGGCGGGcGcucGGAcGACg -3'
miRNA:   3'- -UCGCUGCuuC----CGCCGCUC-Cu--CCU-CUG- -5'
2704 5' -59.3 NC_001491.2 + 142646 0.72 0.438279
Target:  5'- cGCGAUGAaaccuaggggaGGGUgcacgguuauugagGGUGGGGGGGGGGCa -3'
miRNA:   3'- uCGCUGCU-----------UCCG--------------CCGCUCCUCCUCUG- -5'
2704 5' -59.3 NC_001491.2 + 141217 0.69 0.613125
Target:  5'- cGGCGACGAGucGCccucCGAGGAGGAGGa -3'
miRNA:   3'- -UCGCUGCUUc-CGcc--GCUCCUCCUCUg -5'
2704 5' -59.3 NC_001491.2 + 141163 0.69 0.613125
Target:  5'- cAGCGuuuCGGAGuuuaGCccCGAGGAGGAGACu -3'
miRNA:   3'- -UCGCu--GCUUC----CGccGCUCCUCCUCUG- -5'
2704 5' -59.3 NC_001491.2 + 140469 0.68 0.623142
Target:  5'- aAGgGugG--GGUGGgGGGGAGGAGGa -3'
miRNA:   3'- -UCgCugCuuCCGCCgCUCCUCCUCUg -5'
2704 5' -59.3 NC_001491.2 + 140257 0.69 0.593138
Target:  5'- cGGCGAgGAGucCGaGCGGGGAcGGGGACg -3'
miRNA:   3'- -UCGCUgCUUccGC-CGCUCCU-CCUCUG- -5'
2704 5' -59.3 NC_001491.2 + 139336 0.69 0.563378
Target:  5'- gAGCGGgGGAGaGCGGU-AGG-GGAGGCc -3'
miRNA:   3'- -UCGCUgCUUC-CGCCGcUCCuCCUCUG- -5'
2704 5' -59.3 NC_001491.2 + 139309 0.69 0.563378
Target:  5'- gAGCGGgGGAGaGCGGU-AGG-GGAGGCc -3'
miRNA:   3'- -UCGCUgCUUC-CGCCGcUCCuCCUCUG- -5'
2704 5' -59.3 NC_001491.2 + 139282 0.69 0.563378
Target:  5'- gAGCGGgGGAGaGCGGU-AGG-GGAGGCc -3'
miRNA:   3'- -UCGCUgCUUC-CGCCGcUCCuCCUCUG- -5'
2704 5' -59.3 NC_001491.2 + 139229 0.69 0.563378
Target:  5'- gAGCGGgGGAGaGCGGU-AGG-GGAGGCc -3'
miRNA:   3'- -UCGCUgCUUC-CGCCGcUCCuCCUCUG- -5'
2704 5' -59.3 NC_001491.2 + 139202 0.69 0.563378
Target:  5'- gAGCGGgGGAGaGCGGU-AGG-GGAGGCc -3'
miRNA:   3'- -UCGCUgCUUC-CGCCGcUCCuCCUCUG- -5'
2704 5' -59.3 NC_001491.2 + 139175 0.69 0.563378
Target:  5'- gAGCGGgGGAGaGCGGU-AGG-GGAGGCc -3'
miRNA:   3'- -UCGCUgCUUC-CGCCGcUCCuCCUCUG- -5'
2704 5' -59.3 NC_001491.2 + 139148 0.69 0.563378
Target:  5'- gAGCGGgGGAGaGCGGU-AGG-GGAGGCc -3'
miRNA:   3'- -UCGCUgCUUC-CGCCGcUCCuCCUCUG- -5'
2704 5' -59.3 NC_001491.2 + 139121 0.69 0.563378
Target:  5'- gAGCGGgGGAGaGCGGU-AGG-GGAGGCc -3'
miRNA:   3'- -UCGCUgCUUC-CGCCGcUCCuCCUCUG- -5'
2704 5' -59.3 NC_001491.2 + 139094 0.69 0.563378
Target:  5'- gAGCGGgGGAGaGCGGU-AGG-GGAGGCc -3'
miRNA:   3'- -UCGCUgCUUC-CGCCGcUCCuCCUCUG- -5'
2704 5' -59.3 NC_001491.2 + 139067 0.69 0.563378
Target:  5'- gAGCGGgGGAGaGCGGU-AGG-GGAGGCc -3'
miRNA:   3'- -UCGCUgCUUC-CGCCGcUCCuCCUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.