Results 21 - 40 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2704 | 5' | -59.3 | NC_001491.2 | + | 139040 | 0.69 | 0.563378 |
Target: 5'- gAGCGGgGGAGaGCGGU-AGG-GGAGGCc -3' miRNA: 3'- -UCGCUgCUUC-CGCCGcUCCuCCUCUG- -5' |
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2704 | 5' | -59.3 | NC_001491.2 | + | 138094 | 0.74 | 0.350062 |
Target: 5'- uGCGGCGAAGGUGGgggccaagaCGAGGuGG-GGCg -3' miRNA: 3'- uCGCUGCUUCCGCC---------GCUCCuCCuCUG- -5' |
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2704 | 5' | -59.3 | NC_001491.2 | + | 137707 | 0.66 | 0.738771 |
Target: 5'- gGGCGGCGucgcGGCGGCGgccguggaccgagcGGGcgcGGGAGcGCg -3' miRNA: 3'- -UCGCUGCuu--CCGCCGC--------------UCC---UCCUC-UG- -5' |
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2704 | 5' | -59.3 | NC_001491.2 | + | 126535 | 0.67 | 0.73206 |
Target: 5'- gGGUGugGGAGGUGGU-AGc-GGAGGCg -3' miRNA: 3'- -UCGCugCUUCCGCCGcUCcuCCUCUG- -5' |
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2704 | 5' | -59.3 | NC_001491.2 | + | 125600 | 0.71 | 0.46795 |
Target: 5'- gGGCGgccgcugccGCGgcGGCGGCcgucgGAGGGGGGGGa -3' miRNA: 3'- -UCGC---------UGCuuCCGCCG-----CUCCUCCUCUg -5' |
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2704 | 5' | -59.3 | NC_001491.2 | + | 125100 | 0.72 | 0.443594 |
Target: 5'- cGCGGcCGggGgggccgccaacuccaGCGGCGAGGAGGcgccgagAGGCg -3' miRNA: 3'- uCGCU-GCuuC---------------CGCCGCUCCUCC-------UCUG- -5' |
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2704 | 5' | -59.3 | NC_001491.2 | + | 121526 | 0.74 | 0.347777 |
Target: 5'- gAGCGugGGGacgggucccccgccGGgGGCGAGGGGGucagGGACg -3' miRNA: 3'- -UCGCugCUU--------------CCgCCGCUCCUCC----UCUG- -5' |
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2704 | 5' | -59.3 | NC_001491.2 | + | 119620 | 0.68 | 0.64319 |
Target: 5'- cGCGACGc--GCuuccCGGGGAGGAGACg -3' miRNA: 3'- uCGCUGCuucCGcc--GCUCCUCCUCUG- -5' |
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2704 | 5' | -59.3 | NC_001491.2 | + | 117973 | 1.08 | 0.001658 |
Target: 5'- cAGCGACGAAGGCGGCGAGGAGGAGACc -3' miRNA: 3'- -UCGCUGCUUCCGCCGCUCCUCCUCUG- -5' |
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2704 | 5' | -59.3 | NC_001491.2 | + | 116181 | 0.66 | 0.742585 |
Target: 5'- cGGCGGCGAGcccuucuccggcuccGCGGcCGcGGAGGGGAg -3' miRNA: 3'- -UCGCUGCUUc--------------CGCC-GCuCCUCCUCUg -5' |
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2704 | 5' | -59.3 | NC_001491.2 | + | 116046 | 0.68 | 0.653205 |
Target: 5'- gAGCGGCGGAGGCGcCGGGGcuacGACc -3' miRNA: 3'- -UCGCUGCUUCCGCcGCUCCuccuCUG- -5' |
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2704 | 5' | -59.3 | NC_001491.2 | + | 106052 | 0.67 | 0.699926 |
Target: 5'- cGCGGCGGcAGccGCGGCGAGGccaaccacgcucagAGGcGGCa -3' miRNA: 3'- uCGCUGCU-UC--CGCCGCUCC--------------UCCuCUG- -5' |
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2704 | 5' | -59.3 | NC_001491.2 | + | 71033 | 0.74 | 0.313393 |
Target: 5'- cGGCGuuGAAGGUGcGCGcggcccgcuccaGGGAGGAGGCc -3' miRNA: 3'- -UCGCugCUUCCGC-CGC------------UCCUCCUCUG- -5' |
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2704 | 5' | -59.3 | NC_001491.2 | + | 67788 | 0.76 | 0.237475 |
Target: 5'- cGUGACGccAGGGgGGCGAgcGGGGGAGAUg -3' miRNA: 3'- uCGCUGC--UUCCgCCGCU--CCUCCUCUG- -5' |
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2704 | 5' | -59.3 | NC_001491.2 | + | 54608 | 0.73 | 0.36556 |
Target: 5'- gAGCGGCGGcaGCGGCGGGGgauGGuGGGGCg -3' miRNA: 3'- -UCGCUGCUucCGCCGCUCC---UC-CUCUG- -5' |
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2704 | 5' | -59.3 | NC_001491.2 | + | 45254 | 0.66 | 0.751114 |
Target: 5'- cGCGGCGggGGCcgccgcagauuuGGcCGGGGccgcggcGGGGGCc -3' miRNA: 3'- uCGCUGCuuCCG------------CC-GCUCCu------CCUCUG- -5' |
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2704 | 5' | -59.3 | NC_001491.2 | + | 45188 | 0.66 | 0.751114 |
Target: 5'- cGCGGCGggGGCcgccgcagauuuGGcCGGGGccgcggcGGGGGCc -3' miRNA: 3'- uCGCUGCuuCCG------------CC-GCUCCu------CCUCUG- -5' |
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2704 | 5' | -59.3 | NC_001491.2 | + | 45089 | 0.67 | 0.702877 |
Target: 5'- cGCGGCGggGGUcucuacGGC-AGGcuuuGGGGGCu -3' miRNA: 3'- uCGCUGCuuCCG------CCGcUCCu---CCUCUG- -5' |
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2704 | 5' | -59.3 | NC_001491.2 | + | 10806 | 0.67 | 0.683121 |
Target: 5'- aGGUGcAUGAGGGCcGCGAGGcAGGuguccgagAGACg -3' miRNA: 3'- -UCGC-UGCUUCCGcCGCUCC-UCC--------UCUG- -5' |
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2704 | 5' | -59.3 | NC_001491.2 | + | 3966 | 0.67 | 0.681135 |
Target: 5'- uGCGACGAGGaCGGgGAGGAGuccaccaucaacGGACu -3' miRNA: 3'- uCGCUGCUUCcGCCgCUCCUCc-----------UCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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