Results 21 - 40 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2704 | 5' | -59.3 | NC_001491.2 | + | 139040 | 0.69 | 0.563378 |
Target: 5'- gAGCGGgGGAGaGCGGU-AGG-GGAGGCc -3' miRNA: 3'- -UCGCUgCUUC-CGCCGcUCCuCCUCUG- -5' |
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2704 | 5' | -59.3 | NC_001491.2 | + | 140257 | 0.69 | 0.593138 |
Target: 5'- cGGCGAgGAGucCGaGCGGGGAcGGGGACg -3' miRNA: 3'- -UCGCUgCUUccGC-CGCUCCU-CCUCUG- -5' |
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2704 | 5' | -59.3 | NC_001491.2 | + | 45089 | 0.67 | 0.702877 |
Target: 5'- cGCGGCGggGGUcucuacGGC-AGGcuuuGGGGGCu -3' miRNA: 3'- uCGCUGCuuCCG------CCGcUCCu---CCUCUG- -5' |
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2704 | 5' | -59.3 | NC_001491.2 | + | 147447 | 0.67 | 0.719492 |
Target: 5'- cGGCccCGAgggaucguacccccGGGCGGaCGAGGAgaaGGAGGCc -3' miRNA: 3'- -UCGcuGCU--------------UCCGCC-GCUCCU---CCUCUG- -5' |
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2704 | 5' | -59.3 | NC_001491.2 | + | 126535 | 0.67 | 0.73206 |
Target: 5'- gGGUGugGGAGGUGGU-AGc-GGAGGCg -3' miRNA: 3'- -UCGCugCUUCCGCCGcUCcuCCUCUG- -5' |
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2704 | 5' | -59.3 | NC_001491.2 | + | 137707 | 0.66 | 0.738771 |
Target: 5'- gGGCGGCGucgcGGCGGCGgccguggaccgagcGGGcgcGGGAGcGCg -3' miRNA: 3'- -UCGCUGCuu--CCGCCGC--------------UCC---UCCUC-UG- -5' |
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2704 | 5' | -59.3 | NC_001491.2 | + | 148786 | 0.66 | 0.741633 |
Target: 5'- cGCGGgGcucGGCGGCGGGGAgccucGGuGAUg -3' miRNA: 3'- uCGCUgCuu-CCGCCGCUCCU-----CCuCUG- -5' |
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2704 | 5' | -59.3 | NC_001491.2 | + | 116181 | 0.66 | 0.742585 |
Target: 5'- cGGCGGCGAGcccuucuccggcuccGCGGcCGcGGAGGGGAg -3' miRNA: 3'- -UCGCUGCUUc--------------CGCC-GCuCCUCCUCUg -5' |
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2704 | 5' | -59.3 | NC_001491.2 | + | 144486 | 0.66 | 0.751114 |
Target: 5'- cGGUGGCGggGuuccGCGGCGGGcGcucGGAcGACg -3' miRNA: 3'- -UCGCUGCuuC----CGCCGCUC-Cu--CCU-CUG- -5' |
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2704 | 5' | -59.3 | NC_001491.2 | + | 45254 | 0.66 | 0.751114 |
Target: 5'- cGCGGCGggGGCcgccgcagauuuGGcCGGGGccgcggcGGGGGCc -3' miRNA: 3'- uCGCUGCuuCCG------------CC-GCUCCu------CCUCUG- -5' |
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2704 | 5' | -59.3 | NC_001491.2 | + | 106052 | 0.67 | 0.699926 |
Target: 5'- cGCGGCGGcAGccGCGGCGAGGccaaccacgcucagAGGcGGCa -3' miRNA: 3'- uCGCUGCU-UC--CGCCGCUCC--------------UCCuCUG- -5' |
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2704 | 5' | -59.3 | NC_001491.2 | + | 10806 | 0.67 | 0.683121 |
Target: 5'- aGGUGcAUGAGGGCcGCGAGGcAGGuguccgagAGACg -3' miRNA: 3'- -UCGC-UGCUUCCGcCGCUCC-UCC--------UCUG- -5' |
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2704 | 5' | -59.3 | NC_001491.2 | + | 141163 | 0.69 | 0.613125 |
Target: 5'- cAGCGuuuCGGAGuuuaGCccCGAGGAGGAGACu -3' miRNA: 3'- -UCGCu--GCUUC----CGccGCUCCUCCUCUG- -5' |
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2704 | 5' | -59.3 | NC_001491.2 | + | 141217 | 0.69 | 0.613125 |
Target: 5'- cGGCGACGAGucGCccucCGAGGAGGAGGa -3' miRNA: 3'- -UCGCUGCUUc-CGcc--GCUCCUCCUCUg -5' |
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2704 | 5' | -59.3 | NC_001491.2 | + | 140469 | 0.68 | 0.623142 |
Target: 5'- aAGgGugG--GGUGGgGGGGAGGAGGa -3' miRNA: 3'- -UCgCugCuuCCGCCgCUCCUCCUCUg -5' |
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2704 | 5' | -59.3 | NC_001491.2 | + | 3039 | 0.68 | 0.633166 |
Target: 5'- gGGCGGCGAGcGaCGGCGAGcgauugcgucuaGAGGAGcaGCa -3' miRNA: 3'- -UCGCUGCUUcC-GCCGCUC------------CUCCUC--UG- -5' |
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2704 | 5' | -59.3 | NC_001491.2 | + | 119620 | 0.68 | 0.64319 |
Target: 5'- cGCGACGc--GCuuccCGGGGAGGAGACg -3' miRNA: 3'- uCGCUGCuucCGcc--GCUCCUCCUCUG- -5' |
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2704 | 5' | -59.3 | NC_001491.2 | + | 116046 | 0.68 | 0.653205 |
Target: 5'- gAGCGGCGGAGGCGcCGGGGcuacGACc -3' miRNA: 3'- -UCGCUGCUUCCGCcGCUCCuccuCUG- -5' |
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2704 | 5' | -59.3 | NC_001491.2 | + | 1469 | 0.68 | 0.663204 |
Target: 5'- cGCGAaacucccuCGGGucucauGGCGGCGAGuuggaGAGGAGAUg -3' miRNA: 3'- uCGCU--------GCUU------CCGCCGCUC-----CUCCUCUG- -5' |
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2704 | 5' | -59.3 | NC_001491.2 | + | 3966 | 0.67 | 0.681135 |
Target: 5'- uGCGACGAGGaCGGgGAGGAGuccaccaucaacGGACu -3' miRNA: 3'- uCGCUGCUUCcGCCgCUCCUCc-----------UCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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