miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27042 3' -50.1 NC_005832.1 + 65343 0.66 0.991608
Target:  5'- cUGUCGAcgGGCaUGACGUccguccuccuguUUACcgGGCCGu -3'
miRNA:   3'- -ACAGCU--CCG-GUUGCA------------AAUGuaCUGGC- -5'
27042 3' -50.1 NC_005832.1 + 23618 0.66 0.991608
Target:  5'- gGUCGggcAGGgCGGCGUaagGCA-GGCCGg -3'
miRNA:   3'- aCAGC---UCCgGUUGCAaa-UGUaCUGGC- -5'
27042 3' -50.1 NC_005832.1 + 87674 0.66 0.991247
Target:  5'- cGUCuguGAuGGCCGAguccaggagcccguCGUggUACAUGGCCGc -3'
miRNA:   3'- aCAG---CU-CCGGUU--------------GCAa-AUGUACUGGC- -5'
27042 3' -50.1 NC_005832.1 + 12572 0.66 0.990355
Target:  5'- --aCGAGGCCAugGUgcagaagccCGUGucuGCCGa -3'
miRNA:   3'- acaGCUCCGGUugCAaau------GUAC---UGGC- -5'
27042 3' -50.1 NC_005832.1 + 78501 0.66 0.990355
Target:  5'- aGUCuGGGUCGACGUgaACGaGGCUGu -3'
miRNA:   3'- aCAGcUCCGGUUGCAaaUGUaCUGGC- -5'
27042 3' -50.1 NC_005832.1 + 105197 0.66 0.987412
Target:  5'- cGUCGAGGuCCGACaGgaccUUGCAgggGAUCu -3'
miRNA:   3'- aCAGCUCC-GGUUG-Ca---AAUGUa--CUGGc -5'
27042 3' -50.1 NC_005832.1 + 6526 0.67 0.98322
Target:  5'- cUGUgCGGGGCCAgggacagggggcagGCGgugACGUGcGCCGc -3'
miRNA:   3'- -ACA-GCUCCGGU--------------UGCaaaUGUAC-UGGC- -5'
27042 3' -50.1 NC_005832.1 + 26524 0.67 0.981755
Target:  5'- cGUCGAauGGCaCAGCGgaUGCAUGuacgaaACCu -3'
miRNA:   3'- aCAGCU--CCG-GUUGCaaAUGUAC------UGGc -5'
27042 3' -50.1 NC_005832.1 + 52701 0.67 0.98132
Target:  5'- aGUgaGGGCCGugGUgguggacuuggGCAUGGCCa -3'
miRNA:   3'- aCAgcUCCGGUugCAaa---------UGUACUGGc -5'
27042 3' -50.1 NC_005832.1 + 52475 0.67 0.9795
Target:  5'- cGUCGGccgcauagucuGGCCuccCGUUgacgACGUGACCc -3'
miRNA:   3'- aCAGCU-----------CCGGuu-GCAAa---UGUACUGGc -5'
27042 3' -50.1 NC_005832.1 + 11912 0.67 0.977043
Target:  5'- aG-CG-GGCCGcaagACGgccUACGUGACCGa -3'
miRNA:   3'- aCaGCuCCGGU----UGCaa-AUGUACUGGC- -5'
27042 3' -50.1 NC_005832.1 + 48717 0.68 0.971492
Target:  5'- cGUCGAagccuccgaccaGGCCGuguCGacUUGCAUGGCCu -3'
miRNA:   3'- aCAGCU------------CCGGUu--GCa-AAUGUACUGGc -5'
27042 3' -50.1 NC_005832.1 + 35443 0.68 0.957617
Target:  5'- aGUCaAGGgaGugGggUACGUGACCGa -3'
miRNA:   3'- aCAGcUCCggUugCaaAUGUACUGGC- -5'
27042 3' -50.1 NC_005832.1 + 47934 0.69 0.955606
Target:  5'- -cUCGAGGCCGACGacuaccccgagGCGgagguccUGGCCGa -3'
miRNA:   3'- acAGCUCCGGUUGCaaa--------UGU-------ACUGGC- -5'
27042 3' -50.1 NC_005832.1 + 27566 0.69 0.934577
Target:  5'- -uUCGAGGCCuuccugggAGCGgugUGCAcGGCCGu -3'
miRNA:   3'- acAGCUCCGG--------UUGCaa-AUGUaCUGGC- -5'
27042 3' -50.1 NC_005832.1 + 97701 0.7 0.904857
Target:  5'- cGaCGGGGgCAugGUgucggACAUGACCa -3'
miRNA:   3'- aCaGCUCCgGUugCAaa---UGUACUGGc -5'
27042 3' -50.1 NC_005832.1 + 84675 0.71 0.868573
Target:  5'- --aCGAGGCCAugGcagcgGCGUuGGCCGa -3'
miRNA:   3'- acaGCUCCGGUugCaaa--UGUA-CUGGC- -5'
27042 3' -50.1 NC_005832.1 + 17010 1.09 0.007373
Target:  5'- cUGUCGAGGCCAACGUUUACAUGACCGu -3'
miRNA:   3'- -ACAGCUCCGGUUGCAAAUGUACUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.